View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16128_low_6 (Length: 229)

Name: NF16128_low_6
Description: NF16128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16128_low_6
NF16128_low_6
[»] chr4 (11 HSPs)
chr4 (118-229)||(54723933-54724044)
chr4 (124-185)||(53299891-53299952)
chr4 (125-202)||(53013546-53013623)
chr4 (6-47)||(54724112-54724153)
chr4 (124-199)||(21081288-21081364)
chr4 (159-226)||(8828518-8828585)
chr4 (167-222)||(42777332-42777387)
chr4 (159-222)||(55813669-55813732)
chr4 (159-201)||(27485307-27485349)
chr4 (173-222)||(16006366-16006415)
chr4 (124-187)||(9046494-9046558)
[»] chr2 (7 HSPs)
chr2 (124-219)||(3737272-3737367)
chr2 (124-204)||(5003188-5003268)
chr2 (125-181)||(14385030-14385086)
chr2 (125-188)||(32950817-32950881)
chr2 (124-187)||(8184237-8184300)
chr2 (124-222)||(39819837-39819935)
chr2 (159-199)||(5322186-5322226)
[»] chr3 (11 HSPs)
chr3 (125-220)||(49855853-49855949)
chr3 (124-183)||(3707044-3707103)
chr3 (127-186)||(1133005-1133064)
chr3 (124-222)||(15499342-15499440)
chr3 (124-199)||(32858769-32858844)
chr3 (159-219)||(49304202-49304263)
chr3 (124-220)||(25428608-25428704)
chr3 (125-220)||(7302026-7302120)
chr3 (124-199)||(11500044-11500118)
chr3 (125-222)||(33281749-33281848)
chr3 (159-199)||(5939848-5939888)
[»] chr6 (3 HSPs)
chr6 (124-220)||(24379576-24379673)
chr6 (126-219)||(6695246-6695340)
chr6 (124-214)||(33939175-33939265)
[»] chr8 (9 HSPs)
chr8 (125-197)||(4428828-4428900)
chr8 (128-196)||(11961567-11961635)
chr8 (166-222)||(13537175-13537231)
chr8 (166-222)||(13626723-13626779)
chr8 (124-222)||(37388212-37388310)
chr8 (128-222)||(5941009-5941099)
chr8 (163-199)||(11229290-11229326)
chr8 (159-199)||(35376695-35376735)
chr8 (124-222)||(43733163-43733263)
[»] chr7 (7 HSPs)
chr7 (124-190)||(44570227-44570294)
chr7 (124-182)||(7947646-7947704)
chr7 (124-222)||(4788045-4788141)
chr7 (153-222)||(42267050-42267119)
chr7 (163-199)||(9172485-9172521)
chr7 (124-188)||(32430008-32430072)
chr7 (124-199)||(38137879-38137955)
[»] chr1 (4 HSPs)
chr1 (124-199)||(23412020-23412095)
chr1 (124-199)||(52073515-52073590)
chr1 (162-199)||(52331026-52331063)
chr1 (159-199)||(50587021-50587061)
[»] chr5 (5 HSPs)
chr5 (124-222)||(19389861-19389959)
chr5 (159-199)||(6491158-6491198)
chr5 (159-198)||(6491391-6491430)
chr5 (128-199)||(7398846-7398917)
chr5 (123-199)||(2561042-2561118)
[»] scaffold0036 (1 HSPs)
scaffold0036 (159-201)||(82770-82812)
[»] scaffold0519 (1 HSPs)
scaffold0519 (163-199)||(7493-7529)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 54724044 - 54723933
Alignment:
Q  118 caacctgaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattata 217  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  54724044 caaccggaagaaatagatgacattgagaggagaacattttggaggtttatttttcttcataatacaaaatcctactcatttgagaaattaaaaaattata 54723945  T
Q  218 ttggatgttagt 229  Q
    ||||||| ||||    
T  54723944 ttggatgatagt 54723933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 53299891 - 53299952
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaa 185  Q
    ||||||||||||||||||||||||||||  |||| | |||||||||||||||||||||||||    
T  53299891 gaagaaatagatgacattgagaggagaatgttttggaggtttatttttcttcataatacaaa 53299952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 53013546 - 53013623
Alignment:
Q  125 aagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgaga 202  Q
    ||||||||||||||||||||||   || | ||| | |||| ||||||||||||||||||||||||| |||||||||||    
T  53013546 aagaaatagatgacattgagagagaaaaactttggaggttcatttttcttcataatacaaaatcttcctcatttgaga 53013623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 54724153 - 54724112
Alignment:
Q  6 aagaaatacatgtccgtggcaaagtcagttaacttacgattt 47  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  54724153 aagaaatacatgtccgtggcaaagtcagttaacttactattt 54724112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 21081288 - 21081364
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttag-gggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||||||||||||||||||| |||  |||| | ||||| |||||||||||||| |||||| | | ||||||||    
T  21081288 gaagaaatagatgacattgagaggggaatgttttggagggttcatttttcttcataaaacaaaaccctcctcatttg 21081364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 8828518 - 8828585
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattggatgtt 226  Q
    |||||||| ||||||||||||||||||||    || |||||||||| | ||||||| |||||||||||    
T  8828518 ggggtttaattttcttcataatacaaaattcctctaatttgagaaactaaaaaattgtattggatgtt 8828585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 42777387 - 42777332
Alignment:
Q  167 tttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    ||||| ||||||||||||||||||  |||||| ||||| ||||||||| |||||||    
T  42777387 ttttttttcataatacaaaatcttcatcattttagaaactcaaaaattgtattgga 42777332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 55813732 - 55813669
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||| ||||||||||||| |||| |||||||| |||||||| |||| | ||||||| |||||||    
T  55813732 ggggcttatttttcttcaaaatataaaatcttcctcatttgggaaactaaaaaattgtattgga 55813669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 27485349 - 27485307
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttgag 201  Q
    |||||| ||||||||||||||||||||||| | ||||||||||    
T  27485349 ggggttcatttttcttcataatacaaaatcctcctcatttgag 27485307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 16006415 - 16006366
Alignment:
Q  173 ttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    ||||||||||||||  || ||||||||||||| | |||||||||||||||    
T  16006415 ttcataatacaaaacttttctcatttgagaaactaaaaaattatattgga 16006366  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 9046558 - 9046494
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacatttt-aggggtttatttttcttcataatacaaaat 187  Q
    ||||||||| | |||||||||| ||||| | ||| ||| ||| ||||||||||||||||||||||    
T  9046558 gaagaaatataggacattgagatgagaagactttgaggagttcatttttcttcataatacaaaat 9046494  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 3737367 - 3737272
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatatt 219  Q
    |||||||||||||| |||||||||| || |  || |||||| ||||||||||||||||||||||| | |||||||||  || ||||||||| ||||    
T  3737367 gaagaaatagatgatattgagaggaaaaaaaattgggggttaatttttcttcataatacaaaatcatcctcatttgaagaactcaaaaattgtatt 3737272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 204
Target Start/End: Complemental strand, 5003268 - 5003188
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaa 204  Q
    ||||||||| || |||||||||||| || | |||  ||||| ||||||||| |||||| |||||| | |||||||||||||    
T  5003268 gaagaaataaataacattgagaggaaaagactttgagggttcatttttctttataatataaaatcatcctcatttgagaaa 5003188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 14385030 - 14385086
Alignment:
Q  125 aagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataata 181  Q
    |||||||| |||||| ||||||||||| | |||||||||| |||||| |||||||||    
T  14385030 aagaaataaatgacaatgagaggagaatactttaggggttcatttttattcataata 14385086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 32950817 - 32950881
Alignment:
Q  125 aagaaatagatgacattgagaggagaacatttt-aggggtttatttttcttcataatacaaaatc 188  Q
    ||||||||||||||| |||||| |||| ||||| |||| || ||||||||| |||||||||||||    
T  32950817 aagaaatagatgacaatgagagaagaagattttgagggattaatttttcttaataatacaaaatc 32950881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 8184300 - 8184237
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaat 187  Q
    ||||||||| |||||||||||||   || ||||| |||| | ||||||||||||||||||||||    
T  8184300 gaagaaataaatgacattgagagacaaagattttgggggatcatttttcttcataatacaaaat 8184237  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 39819837 - 39819935
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    ||||||||| |||| ||||||| | |||   ||| |||||| |||||||||| |||||||||||| | |||||||| | || | ||||||| |||||||    
T  39819837 gaagaaataaatgatattgagaagggaatgctttgggggttcatttttcttcctaatacaaaatcctcctcatttggggaactaaaaaattgtattgga 39819935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 5322226 - 5322186
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||| ||||||||||||||||||||||| | ||||||||    
T  5322226 ggggttcatttttcttcataatacaaaatcctcctcatttg 5322186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 49855949 - 49855853
Alignment:
Q  125 aagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcattt-gagaaattcaaaaattatattg 220  Q
    ||||||||||||||||||||||  |||  |||| |||||| ||||||||||||||||||||||  | ||||||| ||| || ||||||||| |||||    
T  49855949 aagaaatagatgacattgagagaggaaggttttgggggttcatttttcttcataatacaaaataattctcatttagaggaactcaaaaattgtattg 49855853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 3707044 - 3707103
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataataca 183  Q
    ||||||||||||||||||||||||||||   ||| |||||| ||||||||||||||||||    
T  3707044 gaagaaatagatgacattgagaggagaaggctttgggggttcatttttcttcataataca 3707103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 1133064 - 1133005
Alignment:
Q  127 gaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaa 186  Q
    ||||||||||||||||||||| |||  |||| |||||| ||||| |||||||||||||||    
T  1133064 gaaatagatgacattgagaggggaaggttttgggggttcattttacttcataatacaaaa 1133005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 15499440 - 15499342
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgaga-aattcaaaaattatattgga 222  Q
    |||||||||||| ||||||| ||| |||   ||| |||||| | ||||||||||||||||||||||| |||||||| || || ||||||||| |||||||    
T  15499440 gaagaaatagattacattgaaaggggaaggcttt-ggggttcacttttcttcataatacaaaatcttcctcatttgggagaactcaaaaattgtattgga 15499342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 32858769 - 32858844
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||||||||||||||||||||||  ||   ||| |||||| |||||||||||||||| |||||| | ||||||||    
T  32858769 gaagaaatagatgacattgagagggaaaggctttgggggttcatttttcttcataatataaaatcctcctcatttg 32858844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 49304202 - 49304263
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcattt-gagaaattcaaaaattatatt 219  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| || ||||||||| ||||    
T  49304202 ggggtttatttttcttcacgatacaaaatcttactcatttagaggaactcaaaaattgtatt 49304263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 25428608 - 25428704
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattg 220  Q
    ||||||||||| || |||||||||||| |  ||| | | || ||||||  |||||||| |||||||  |||||||||| || |||||||||||||||    
T  25428608 gaagaaatagaagatattgagaggagagcgctttggagattaatttttactcataataaaaaatctccctcatttgaggaactcaaaaattatattg 25428704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 220
Target Start/End: Original strand, 7302026 - 7302120
Alignment:
Q  125 aagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattg 220  Q
    ||||||||||| |||||||||| | ||   ||| ||| || ||||||||||||| ||||||||| | |||||||||| || ||||||||| |||||    
T  7302026 aagaaatagataacattgagagaataaggctttggggattcatttttcttcatagtacaaaatccttctcatttgag-aactcaaaaattgtattg 7302120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 11500044 - 11500118
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||||||||| ||||| ||| ||| ||||| |||| |||||||||||||||||| |||| | | ||||||||    
T  11500044 gaagaaatagatgatattgaaaggggaagatttt-gggggttatttttcttcataatagaaaaccctcctcatttg 11500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 33281848 - 33281749
Alignment:
Q  125 aagaaatagatgacattgagaggagaacatttt-aggggtttatttttcttcataatacaaaatcttactcattt-gagaaattcaaaaattatattgga 222  Q
    ||||||| ||||||||||||||  ||| ||||| |||| ||||||||| ||||||||| |||||| | |||||||  || || ||||||||| |||||||    
T  33281848 aagaaatggatgacattgagagaggaagattttgagggatttattttttttcataatataaaatcctcctcatttataggaactcaaaaattgtattgga 33281749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 5939888 - 5939848
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||| | ||||||||||||||||||||||| ||||||||    
T  5939888 ggggttaacttttcttcataatacaaaatcttcctcatttg 5939848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 24379576 - 24379673
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcattt-gagaaattcaaaaattatattg 220  Q
    |||||||||||||||||||||||| ||| | ||| | | || ||||||||||| ||||||||| | | ||||||| |||||| ||||||||| |||||    
T  24379576 gaagaaatagatgacattgagaggggaagactttggtgtttcatttttcttcaaaatacaaaaccctcctcatttagagaaactcaaaaattgtattg 24379673  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 6695246 - 6695340
Alignment:
Q  126 agaaatagatgacattgagaggagaacattttagggg-tttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatatt 219  Q
    ||||||||| ||||||||||| |||  ||||| |||| |||||| || ||||||||||||||||||  | || || |||||| ||||||||||||    
T  6695246 agaaatagaagacattgagagaagaggattttggggggtttattatttttcataatacaaaatctttttaatgtgggaaattaaaaaattatatt 6695340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 33939265 - 33939175
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaatt 214  Q
    ||||||||| |||| |||||||| | || | ||| ||| || ||||||||||||||| ||||||| | |||||||||| ||||||| ||||    
T  33939265 gaagaaatatatgatattgagagaaaaagactttggggattcatttttcttcataatgcaaaatccttctcatttgaggaattcaacaatt 33939175  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 4428828 - 4428900
Alignment:
Q  125 aagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatt 197  Q
    |||||||||||||||||||||||| || | ||| ||| ||  |||||||||||||||||||||| | ||||||    
T  4428828 aagaaatagatgacattgagaggaaaagactttggggcttcttttttcttcataatacaaaatcctcctcatt 4428900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 11961635 - 11961567
Alignment:
Q  128 aaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcat 196  Q
    |||||||||||||||||| || || |||||  | ||| |||||||||| |||||||||||||| |||||    
T  11961635 aaatagatgacattgagacgaaaatattttgagagttcatttttcttcgtaatacaaaatcttcctcat 11961567  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 13537175 - 13537231
Alignment:
Q  166 atttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||||||||||| ||| || | || |||||||||| |||||||||||||||||    
T  13537175 atttttcttcataatataaattcgtccttatttgagaaactcaaaaattatattgga 13537231  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 13626723 - 13626779
Alignment:
Q  166 atttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||||||||||| ||| || | || |||||||||| |||||||||||||||||    
T  13626723 atttttcttcataatataaattcgtccttatttgagaaactcaaaaattatattgga 13626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 37388212 - 37388310
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||||||||||||||||||| |||   ||| ||  || ||||||||| |||||| ||||||||  ||||||| |  | ||||||||| |||||||    
T  37388212 gaagaaatagatgacattgagaggggaaggctttgggatttcatttttctttataataaaaaatctttttcatttgggggactcaaaaattgtattgga 37388310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 5941009 - 5941099
Alignment:
Q  128 aaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||||| ||||||||| ||| | ||| |||| ||| |||||   ||| ||||||||| | |||||||| ||| ||||||||||||||||||    
T  5941009 aaatagatgatattgagaggggaagacttttggggattaattttc---atagtacaaaatcctcctcatttgggaa-ttcaaaaattatattgga 5941099  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 11229326 - 11229290
Alignment:
Q  163 tttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||||||||||||||||||||||||||  |||||||    
T  11229326 tttatttttcttcataatacaaaatcttcgtcatttg 11229290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 35376735 - 35376695
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||| |||||||||||| |||||||||||| ||||||||    
T  35376735 ggggttcatttttcttcatgatacaaaatcttcctcatttg 35376695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 43733263 - 43733163
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggttta-tttttcttcataatacaaaatcttactcatttga-gaaattcaaaaattatattgg 221  Q
    ||||||||||| |||||||  ||||||    |||||||||| | ||||| |||||||||||||||| | ||||||||| | |||| ||||||| ||||||    
T  43733263 gaagaaatagaagacattggaaggagagggctttaggggttaactttttattcataatacaaaatcctcctcatttgagggaattaaaaaattgtattgg 43733164  T
Q  222 a 222  Q
    |    
T  43733163 a 43733163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 44570227 - 44570294
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggg-gtttatttttcttcataatacaaaatctt 190  Q
    |||||||||||||||||| ||||| | | ||||||||  |||||||||| ||||||||||||||||||    
T  44570227 gaagaaatagatgacattaagagggggagattttaggttgtttatttttattcataatacaaaatctt 44570294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 7947646 - 7947704
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatac 182  Q
    |||||||||||| ||| |||||||  || |||||||||||| |||||||||||||||||    
T  7947646 gaagaaatagataacaatgagagggaaagattttaggggttcatttttcttcataatac 7947704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 4788141 - 4788045
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||||||||||||||  ||||| ||  ||| |||| |||||||||||||||||| |||||| | || ||||| | || | ||||||| |||||||    
T  4788141 gaagaaatagatgacattggaaggaggac--tttgggggcttatttttcttcataatataaaatcatccttatttggggaactaaaaaattgtattgga 4788045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 42267119 - 42267050
Alignment:
Q  153 attttaggggtttatttttcttcataatacaaaa-tcttactcatttgagaaattcaaaaattatattgga 222  Q
    |||||||| ||| ||||||||||||||||||||| ||||| |||||||   |||||||||||| |||||||    
T  42267119 attttaggagttaatttttcttcataatacaaaactctta-tcatttggagaattcaaaaattgtattgga 42267050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 9172485 - 9172521
Alignment:
Q  163 tttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||||||||||||||||||||| | ||||||||    
T  9172485 tttatttttcttcataatacaaaatcatcctcatttg 9172521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 32430072 - 32430008
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatc 188  Q
    ||||||||||||||  ||||||||  || ||||| | ||||||||||||||| |||| |||||||    
T  32430072 gaagaaatagatgatgttgagagggaaagattttggaggtttatttttcttcgtaatgcaaaatc 32430008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 38137879 - 38137955
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttagg-ggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||| || ||||||| |||| ||  | |||||| |||| ||||||||||||||||||||||| | ||||||||    
T  38137879 gaagaaatggaggacattgggaggggaggactttaggaggttcatttttcttcataatacaaaatcctcctcatttg 38137955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 23412095 - 23412020
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||||||||||||| ||||||||| |  || | |||| ||||||||||||||| ||||||| | ||||||||    
T  23412095 gaagaaatagatgacattaagaggagaagacctttgaggttcatttttcttcataattcaaaatcctcctcatttg 23412020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 52073590 - 52073515
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||||||||||||||||||||| |||   ||| ||| || ||||||||||||||| ||||| | | ||||||||    
T  52073590 gaagaaatagatgacattgagaggggaaggctttggggtttcatttttcttcataattcaaaaccctcctcatttg 52073515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 52331026 - 52331063
Alignment:
Q  162 gtttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  52331026 gtttatttttcttcataatacaaaatcatcctcatttg 52331063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 50587021 - 50587061
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||| ||||||||||||||||||||||| | ||||||||    
T  50587021 ggggttcatttttcttcataatacaaaatcctcctcatttg 50587061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 19389959 - 19389861
Alignment:
Q  124 gaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttgagaaattcaaaaattatattgga 222  Q
    ||||||||| |||| |||||||  ||||  |||| |||||| |||| |||||||||||||||||| | |||||||| | || | ||||||| |||||||    
T  19389959 gaagaaataaatgatattgagaaaagaaggttttgggggttcatttatcttcataatacaaaatcctcctcatttggggaactaaaaaattgtattgga 19389861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 6491158 - 6491198
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  6491158 ggggttcatttttcttcataatacaaaatcttcctcatttg 6491198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 6491430 - 6491391
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcattt 198  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  6491430 ggggttcatttttcttcataatacaaaatcttcctcattt 6491391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 7398917 - 7398846
Alignment:
Q  128 aaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||| |||||||||||||| ||| | ||| |||| | ||||||||||||||| ||||||| | ||||||||    
T  7398917 aaatatatgacattgagaggggaagactttgggggctcatttttcttcataattcaaaatcatcctcatttg 7398846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 2561042 - 2561118
Alignment:
Q  123 tgaagaaatagatgacattgagaggagaacattttaggggtttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||||||||||||||||||||| | |||   ||| | |||| | |||||||| |||||||||||| | ||||||||    
T  2561042 tgaagaaatagatgacattgagaagggaaagctttggaggttcacttttcttcgtaatacaaaatcattctcatttg 2561118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 82770 - 82812
Alignment:
Q  159 ggggtttatttttcttcataatacaaaatcttactcatttgag 201  Q
    |||||||||||||||||||||||||||||| | || |||||||    
T  82770 ggggtttatttttcttcataatacaaaatcctcctaatttgag 82812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 7493 - 7529
Alignment:
Q  163 tttatttttcttcataatacaaaatcttactcatttg 199  Q
    ||||||||||||||||||||||||||||  |||||||    
T  7493 tttatttttcttcataatacaaaatcttcgtcatttg 7529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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