View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16129_high_1 (Length: 505)
Name: NF16129_high_1
Description: NF16129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16129_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 147 - 490
Target Start/End: Complemental strand, 10615625 - 10615283
Alignment:
| Q |
147 |
tataactctataaattcatattgttacctcatatattctaaatttttaacgaggagaactaactgttaattactactaaaatgagttaaagaaaatggaa |
246 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615625 |
tataactctataaattcatat-gttacctcatatattctaaatttttaacgaggagaactaactgttaattactactaaaatgagttaaagaaaatggaa |
10615527 |
T |
|
| Q |
247 |
aacatgtttatagggtaagagatttacattagttttcatagtattaatttgtttttatgtgttgtaattacacaatcatatctgagtcacgtatatgctt |
346 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615526 |
aacacgtttatagggtaagagatttaaattagttttcatagtattaatttttttttatgtgttgtaattacacaatcatatctgagtcacgtatatgctt |
10615427 |
T |
|
| Q |
347 |
tatagtatatgcactatactgttgctatttacgtaaagagaacaagatttgtttttatttatacctacccaccttataacagcatttgttacaaacatgt |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615426 |
tatagtatatgcactatactgttgctatttacgtaaagagaacatgatttgtttttatttatacctacccaccttataacagcatttgttacaaacatgt |
10615327 |
T |
|
| Q |
447 |
tcatagtgcttccccaatattatttatatatgcatggtggattc |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10615326 |
tcatagtgcttccccaatattatttatatatgcatggtggattc |
10615283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 10615750 - 10615643
Alignment:
| Q |
16 |
aatatctaatcccagctcgactctttataactttctattgttttgtattgcgaagactttgcattttattagaaccctagcctgcctcttattattcatt |
115 |
Q |
| |
|
||||||||| |||| ||||||| || | | ||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
10615750 |
aatatctaaccccaactcgacttttaagatctttctattgttttgtattgctaagactttgca--------------tagcctgcctctttttattcatt |
10615665 |
T |
|
| Q |
116 |
ctattatctcttcttgtcatga |
137 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
10615664 |
ctattatctcttcttgtaatga |
10615643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University