View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16129_low_3 (Length: 433)
Name: NF16129_low_3
Description: NF16129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16129_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 27939821 - 27939478
Alignment:
| Q |
8 |
gacatcatcaccaaaaaatctcaactgagaaagtgtcccacgttttcctttacccctttcaatgttgacaaaaacccactaagctaccttccatggagaa |
107 |
Q |
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| T |
27939821 |
gacatcatcaccaaaaaatctccactgagaaagtgtcccacgttttcctttacccctttcaatgttgacaaaaacccactaagctaccttctatggagaa |
27939722 |
T |
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| Q |
108 |
tatcaaagtttcgatttttctctgattcggtataaactgaccaaatactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcc |
207 |
Q |
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| T |
27939721 |
tatcaaagtttcgatttttctctgattcggtataaactgaccaaatactgtgctgaagcaatgcgtagagagatcgcgtttctcgctcagcctcgattcc |
27939622 |
T |
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| Q |
208 |
tcattctcctccttgttctctcaattttcattattttcgcattctcttcttctaaactggtatgctcctatgacccttttgtttatatattgctgtcatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
27939621 |
tcattctcctccttgttctctcaattttcattattttcgcattctcttcttctaaactggtatgctcttatgacccttttgtctatatattgctgtcatt |
27939522 |
T |
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| Q |
308 |
gtggatctgatctgggttattgataatatgaattaaaaatgtga |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27939521 |
gtggatctgatctgggttattgataatatgaattaaaaatgtga |
27939478 |
T |
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