View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16129_low_4 (Length: 426)
Name: NF16129_low_4
Description: NF16129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16129_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 406
Target Start/End: Original strand, 4483183 - 4483578
Alignment:
| Q |
13 |
aatataaatgcagaatc-actatatttatcaggctttccattctggccatactcaactttgacatacttggaaaaataggtacttttgactgcaattttc |
111 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483183 |
aatatcaatgcagaatccactatatttatcaggctttccattctggccatactcaaccttgacatacttggaaaaataggtacttttgactgcaattttc |
4483282 |
T |
|
| Q |
112 |
aatggannnnnnn--ctggtggcatgttcaagccctttggaccacggtctaaattcccaggccagtggacacccctgaaacattctgtttttccagtaac |
209 |
Q |
| |
|
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483283 |
aatggttttttttttctgtaggcatgttca-gccctttggaccacggtctaaattcccaggccagtggacacccctgaaacattctgtttttccagtaac |
4483381 |
T |
|
| Q |
210 |
cttatttccaccttgtcctgcatggtggattgtagtgaagccatgctgttcggtccaaaaacataattccttgtaacttttcccagccacattaactatc |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483382 |
cttatttccaccttgtcctgcatggttgattgtagtgaagccatgctgttcggtccaaaaacataattccttgtaacttttcccagccacattaactatc |
4483481 |
T |
|
| Q |
310 |
cttaggacaagattcttctgcatgacttgtctagcttcaagttgaatatggtcactttaaccaatgaaattgctagactgtatttcgcttagtaaaa |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483482 |
cttaggacaagattcttctgcatgacttgtccagcttcaagttgaatatggccacttaaaccaatgaaattgctagactgtatttcgcttagtaaaa |
4483578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 4488155 - 4488545
Alignment:
| Q |
19 |
aatgcagaatc-actatatttatcaggctttccattctggccatactcaactttgacatacttggaaaaataggtact---tttgactgcaattttcaat |
114 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||||| |||| |||||| || ||||||| |||| || | ||||||||||| ||||| |
|
|
| T |
4488155 |
aatgcagaatccagtatatttatcaggctctccattctggccatacacaaccttgacaaacctggaaaacgaggttctgcttctgactgcaattctcaat |
4488254 |
T |
|
| Q |
115 |
ggannnnnnnctggtggcatgttcaagccctttggaccacggtctaaattcccaggccagtggacacccctgaaacattctgtttttccagtaaccttat |
214 |
Q |
| |
|
||| ||| ||||||||| ||||||||||| |||| | ||||||||||||| | |||||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
4488255 |
ggatttttttctgtgggcatgttccagccctttggaatacgggcccaattcccaggccaccgtacacccctgaaacattttgtatttccagcaaccttat |
4488354 |
T |
|
| Q |
215 |
ttccaccttgtcctgcatggtggattgtagtgaagccatgctgttcggtccaaaaacataattccttgtaacttttcccagccacattaactatccttag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| |||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4488355 |
ttccaccttgtcctgcatggtggattgtagtaaatccatgttgttgagtccaaaagcataattccttgtaactcttcccagccacatttactatccttaa |
4488454 |
T |
|
| Q |
315 |
gacaagattcttctgcatgacttgtctagcttcaagttgaatatggtcactttaaccaatgaaattgctagactgtatttcgcttagtaaa |
405 |
Q |
| |
|
|||||||||||||||||||| ||| | || |||||||||||||||| ||||| |||||| |||||||| ||| ||||||| ||||||||| |
|
|
| T |
4488455 |
gacaagattcttctgcatgagttggccagattcaagttgaatatggccacttaaaccaaggaaattgcaagaaagtatttctcttagtaaa |
4488545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University