View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16129_low_5 (Length: 271)
Name: NF16129_low_5
Description: NF16129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16129_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 9832140 - 9832372
Alignment:
| Q |
22 |
catagttgagtttcattgctgaaaataaatcacatattagaacacatatcattcaagtgcaaatgttgacaatggataaatcaaacgaaaaaactcaata |
121 |
Q |
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| T |
9832140 |
catagttgagtttcattgctgaaaataaatcacatattagaacacatatcattcaagtgcaaatgttgacaatggataaatcaaacgaaaaaactcaata |
9832239 |
T |
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| Q |
122 |
aatatacataagagtagattattgnnnnnnnntcaaacaattgaactctattatttaccttgtctatacaaataaagcttttgaattcgaaaatgttgcc |
221 |
Q |
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| T |
9832240 |
aatatacataagagtagattattgaaaaaaaatcaaacaattgaactctattatttaccttctcgatacaaataaagcttttgaattcgaatatgttgcc |
9832339 |
T |
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| Q |
222 |
atggatgagagatctacttgaaatggagtttat |
254 |
Q |
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| T |
9832340 |
atggatgagagatctacttgaaatggagtttat |
9832372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 28175547 - 28175338
Alignment:
| Q |
48 |
aaatcacatattagaacacatatcattcaagtgcaaatgttgacaatggataaatcaaac-gaaaaaactcaataaatatacataagagtagattattgn |
146 |
Q |
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| T |
28175547 |
aaatgacatattagaatacatttcagtcaattgcaaatgctgaaaatggaaaaatcaaaccgaaaaaactcaatatatgttcataagagaa-attattga |
28175449 |
T |
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| Q |
147 |
nnnnnnnt--caaacaattgaactctattatttaccttgtctatacaaataaagcttttgaattcgaaaatgttgccatg----gatgagagatctactt |
240 |
Q |
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| T |
28175448 |
aaaaaattatcaaacaactaaactctaatatttaccttgtctatacaaattaaacatttgaatttggatatgttgccatggatggatgagagatctactt |
28175349 |
T |
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| Q |
241 |
gaaatggagtt |
251 |
Q |
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| T |
28175348 |
gaaatagagtt |
28175338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 28114967 - 28114887
Alignment:
| Q |
167 |
ctctattatttaccttgtctatacaaataaagcttttgaattcgaaaatgttgccatggatgagagatctacttgaaatgg |
247 |
Q |
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| T |
28114967 |
ctctattatttaccttgtctataggaataaatcatttgaatttggatatgttgccatggatgagagatctacttgaaatgg |
28114887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 28115089 - 28115016
Alignment:
| Q |
48 |
aaatcacatattagaacacatatcattcaagtgcaaatgttgacaatggataaatcaaacgaaaaaactcaata |
121 |
Q |
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|||| ||||||||||| |||| ||| |||| |||||||| ||| ||| || |||||||| ||| |||||||||| |
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| T |
28115089 |
aaatgacatattagaatacatttcagtcaactgcaaatgctgaaaattgaaaaatcaaatgaataaactcaata |
28115016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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