View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1612_high_1 (Length: 369)
Name: NF1612_high_1
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 29611848 - 29612201
Alignment:
| Q |
18 |
ataccatgttgagaaacatggttgagcccaactaagagaaataaattgagagagagatgaattatatggaattaatagaccaaagaatatgatacaatta |
117 |
Q |
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| T |
29611848 |
ataccatgttgagaaacatggttgagcccaactaagagaaataaattgagagaaagatgaattatatggaattaatagaccaaagaatatgatacaatta |
29611947 |
T |
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| Q |
118 |
cggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaactacctacacaaattctaacaa |
217 |
Q |
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| T |
29611948 |
cggtaggatacacctttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaactacctaaacaaattctaacaa |
29612047 |
T |
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| Q |
218 |
atatctaacacaaagtttttatttgatgtgcatgttttcaggacaactgcacccctacacacattcgttccctgctttttcaag-aagtcaat------- |
309 |
Q |
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| T |
29612048 |
atatctaacac--agtttttatttgatgtgcatgttttcaggacaactgcactactacacagattcgttccctgctttttcaagtcaatcattactgaat |
29612145 |
T |
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| Q |
310 |
-acttgggattacaatcaacggtgagtacaaattgaggtttttggtctctgctcct |
364 |
Q |
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| T |
29612146 |
cacttgggaccacaatcaacggtgagtacaaattgaggtttttggtttctgttcct |
29612201 |
T |
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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 100 - 189
Target Start/End: Complemental strand, 38467228 - 38467139
Alignment:
| Q |
100 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaac |
189 |
Q |
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| T |
38467228 |
aagaatatgattcaattagggtaggatacatctttatatagtgatcccaagttaactaacataacaaatttccacctaatcataactaac |
38467139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 25953296 - 25953405
Alignment:
| Q |
54 |
agaaataaattgagagagagatgaattatatggaattaatagaccaaagaatatgatacaattacggtaggatacaactttatattgtgatcccaagtta |
153 |
Q |
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| T |
25953296 |
agaaataaattgagaaaaatatgaattattttgaaataatagaatgaagaatatgatataactagggtaggatacacttttatataataatcttaagtta |
25953395 |
T |
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| Q |
154 |
actaacataa |
163 |
Q |
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| T |
25953396 |
actaacataa |
25953405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 45518804 - 45518884
Alignment:
| Q |
18 |
ataccatgttgagaaacatggttgagcccaactaagag--aaataaattgagagagagatgaattatatggaattaataga |
96 |
Q |
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| T |
45518804 |
ataccatgttgagaagcatggtatagcccaacaaagagaaaaataaattgagagaaagattgattatttgaaattgataga |
45518884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 198
Target Start/End: Original strand, 17236561 - 17236659
Alignment:
| Q |
100 |
aagaatatgatacaattacggtaggatacaactttatattgtgatcccaagttaactaacataataaacttccatctaatcataattaacttctaacta |
198 |
Q |
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| T |
17236561 |
aagaatatgatacgattagagtaagatatacctttatacagtgatcccaaggtaactaacataattaacttccacctaatcataactaacttctaacta |
17236659 |
T |
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