View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1612_high_3 (Length: 332)

Name: NF1612_high_3
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1612_high_3
NF1612_high_3
[»] chr2 (17 HSPs)
chr2 (12-315)||(2323612-2323915)
chr2 (111-315)||(2336620-2336824)
chr2 (69-241)||(2313879-2314054)
chr2 (187-234)||(39693932-39693979)
chr2 (235-280)||(3594260-3594305)
chr2 (235-280)||(33561533-33561578)
chr2 (235-280)||(33953853-33953898)
chr2 (217-280)||(30313209-30313272)
chr2 (217-280)||(30323495-30323559)
chr2 (217-280)||(41678431-41678494)
chr2 (235-281)||(31385767-31385813)
chr2 (217-269)||(5543061-5543114)
chr2 (235-280)||(29874105-29874150)
chr2 (213-269)||(41283534-41283591)
chr2 (251-299)||(13154479-13154527)
chr2 (217-280)||(29873600-29873664)
chr2 (178-214)||(45635748-45635784)
[»] chr8 (13 HSPs)
chr8 (155-315)||(40991749-40991910)
chr8 (235-281)||(34219215-34219261)
chr8 (178-253)||(11442911-11442988)
chr8 (235-306)||(4715281-4715352)
chr8 (235-280)||(4154748-4154793)
chr8 (189-277)||(7480233-7480322)
chr8 (216-280)||(9620738-9620803)
chr8 (217-280)||(4154344-4154407)
chr8 (180-232)||(17888141-17888193)
chr8 (155-250)||(30737619-30737715)
chr8 (194-256)||(11970297-11970360)
chr8 (217-269)||(45121973-45122026)
chr8 (176-232)||(45245074-45245130)
[»] chr4 (18 HSPs)
chr4 (181-277)||(23210821-23210916)
chr4 (155-272)||(29802580-29802698)
chr4 (178-267)||(31957544-31957634)
chr4 (158-278)||(41603193-41603314)
chr4 (178-255)||(2041137-2041215)
chr4 (178-232)||(31894663-31894717)
chr4 (178-278)||(10452337-10452438)
chr4 (217-280)||(760220-760284)
chr4 (237-272)||(11348410-11348445)
chr4 (235-280)||(15841448-15841493)
chr4 (235-280)||(28034260-28034305)
chr4 (243-306)||(7147730-7147792)
chr4 (187-256)||(9965910-9965979)
chr4 (218-299)||(14134218-14134300)
chr4 (235-280)||(15841064-15841109)
chr4 (187-232)||(35648518-35648563)
chr4 (178-241)||(30788288-30788352)
chr4 (199-269)||(52884929-52885001)
[»] chr6 (12 HSPs)
chr6 (217-280)||(6071163-6071227)
chr6 (217-280)||(12092545-12092609)
chr6 (187-270)||(28033239-28033322)
chr6 (176-221)||(34900624-34900669)
chr6 (180-277)||(20848353-20848452)
chr6 (180-214)||(29028188-29028222)
chr6 (192-233)||(3624849-3624890)
chr6 (178-278)||(5034845-5034946)
chr6 (217-277)||(8481960-8482021)
chr6 (217-269)||(10073679-10073732)
chr6 (189-237)||(405056-405104)
chr6 (178-281)||(34661633-34661737)
[»] chr1 (10 HSPs)
chr1 (185-256)||(7373339-7373410)
chr1 (156-256)||(8240365-8240467)
chr1 (235-280)||(10351191-10351236)
chr1 (213-281)||(12772902-12772971)
chr1 (235-280)||(22793309-22793354)
chr1 (176-223)||(3808928-3808975)
chr1 (234-280)||(3458684-3458730)
chr1 (184-226)||(31503443-31503485)
chr1 (217-269)||(26661585-26661638)
chr1 (233-269)||(44091936-44091972)
[»] chr3 (10 HSPs)
chr3 (178-255)||(45717833-45717911)
chr3 (178-249)||(50329356-50329428)
chr3 (235-272)||(39336311-39336348)
chr3 (176-298)||(41857437-41857560)
chr3 (237-279)||(54451260-54451302)
chr3 (241-285)||(30399662-30399706)
chr3 (217-306)||(2417322-2417412)
chr3 (230-272)||(12749208-12749250)
chr3 (235-272)||(46546407-46546444)
chr3 (217-269)||(53118038-53118090)
[»] chr7 (5 HSPs)
chr7 (180-233)||(23714886-23714939)
chr7 (177-232)||(32567962-32568017)
chr7 (176-277)||(3114462-3114564)
chr7 (236-282)||(42282101-42282147)
chr7 (180-232)||(18290409-18290461)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-277)||(41498-41598)
[»] chr5 (8 HSPs)
chr5 (210-282)||(2828083-2828156)
chr5 (217-269)||(26590973-26591026)
chr5 (238-281)||(6557471-6557514)
chr5 (171-280)||(9510537-9510647)
chr5 (243-280)||(31509654-31509691)
chr5 (243-280)||(31509762-31509799)
chr5 (217-269)||(33747813-33747866)
chr5 (243-280)||(36522327-36522364)
[»] scaffold1782 (1 HSPs)
scaffold1782 (187-232)||(1320-1365)
[»] scaffold1312 (1 HSPs)
scaffold1312 (187-232)||(85-130)
[»] scaffold0807 (1 HSPs)
scaffold0807 (222-282)||(3107-3168)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 2323915 - 2323612
Alignment:
Q  12 atcatcagttatcttgcatgtcacaaactaggtattttatgtcttatctctacggtctctagggaaaagaggtcctaataaatgtagtttgattgaaaaa 111  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2323915 atcaacagttatcttgcatgttacaaactaggtattttatgtcttatctctccggtctctagggaaaagaggtcctaataaatgtagtttggttgaaaaa 2323816  T
Q  112 taagtaaagtctaaccaactgctaccttacgagggaagtctgtgggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatctt 211  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2323815 taagtaaagtctaaccaaccgctgccttacgagggaagtctgtgggatcatctacattgagaccaaagtaaccatacaagtgagttggacaccacatctt 2323716  T
Q  212 aacctaaaatcttaaggcattgatttatggatcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacaccttct 311  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2323715 aacctaaaaccttaaggcattggtttatggatcctctcacttataaagtgtccaacctccatttttctaaacaaagcgagacttctaattcacaccttct 2323616  T
Q  312 acac 315  Q
    ||||    
T  2323615 acac 2323612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 111 - 315
Target Start/End: Complemental strand, 2336824 - 2336620
Alignment:
Q  111 ataagtaaagtctaaccaactgctaccttacgagggaagtctgtgggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatct 210  Q
    |||||||||||||| |||| || |   | ||||||| |||||| | ||||||| |||||| |  || |||||||| ||||||||||||||||||||||||    
T  2336824 ataagtaaagtctagccaagtggtggatcacgaggggagtctg-gtgatcatcgacattgggttcagagcaaccacacaagtgagttggacaccacatct 2336726  T
Q  211 taacctaaaatcttaaggcattg-atttatggatcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacacctt 309  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| |||   || |||||||| |||||| |     
T  2336725 taacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaatttgaaacttctaactcacacatg 2336626  T
Q  310 ctacac 315  Q
    ||||||    
T  2336625 ctacac 2336620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 2314054 - 2313879
Alignment:
Q  69 tctagggaaaagaggtcctaataaatgtagtttgattgaaaaataagtaaagtctaaccaactgctaccttacgagggaagtctgtgggatcatctacat 168  Q
    |||| ||||||||||||||||||| ||||||||| |||| | || |||||||||||  ||| || |  || ||||||||||||     ||||||| || |    
T  2314054 tctaaggaaaagaggtcctaataattgtagtttggttgagagatgagtaaagtctagtcaagtgttggctcacgagggaagtcccaaagatcatccacgt 2313955  T
Q  169 tgagaccaaagcaaccatacaagtgagt--tggacaccacatcttaacctaaaatcttaaggcatt-gatttatgg 241  Q
     |  ||||||||||||||||||||||||  |||||||||||||||| | |||||||||||||| || |||||||||    
T  2313954 aggcaccaaagcaaccatacaagtgagttgtggacaccacatcttagcataaaatcttaaggcgttggatttatgg 2313879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 39693979 - 39693932
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcattga 234  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39693979 acaagtgagttggacaccacatcttaacccaaaatcttaaggcattga 39693932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 3594260 - 3594305
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||    
T  3594260 tttatggatcctatcacttataaagtgttcgacctccacttttcta 3594305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 33561533 - 33561578
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||    
T  33561533 tttatgggtcctctcacttataaagtgtttaacctccacttttcta 33561578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 33953853 - 33953898
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||    
T  33953853 tttatgggtcctctcacttatatagtgttcaacctccacttttcta 33953898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 30313272 - 30313209
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||||||||| |||||||    
T  30313272 aaaatcttaaggcaatgagtttttgggtcctctcacttataa-gtgttcaacctccacttttcta 30313209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 30323559 - 30323495
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||| ||||||||| ||| ||||| | ||||||||||| |||||||||||||||||| |||||||    
T  30323559 aaaaccttaaggcaatgagtttataggtcctctcacttctaaagtgttcaacctccaattttcta 30323495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 41678431 - 41678494
Alignment:
Q  217 aaaatcttaaggcattgatttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||| |||||||||  | ||||||| ||||||||||||||||||||| |||||||  |||||||    
T  41678431 aaaaccttaaggcaaaggtttatgggtcctctcacttataaagtgtttaacctccccttttcta 41678494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 31385813 - 31385767
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttctaa 281  Q
    ||||||| |||| |||||||||| ||| |||||||||||||||||||    
T  31385813 tttatgggtcctttcacttataaggtgctcaacctccatttttctaa 31385767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 5543061 - 5543114
Alignment:
Q  217 aaaatcttaaggcatt-gatttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||||||||| | | |||||||||||||| |||||||| |||||||||||    
T  5543061 aaaatcttaaggcaataggtttatggatcctcttacttataaggtgttcaacct 5543114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 29874105 - 29874150
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| ||||| || ||||||||||||||||||||| |||||||    
T  29874105 tttatgggtcctcccaattataaagtgttcaacctccacttttcta 29874150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 41283534 - 41283591
Alignment:
Q  213 acctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||| ||||||||| ||| ||||||| |||||| |||||||| |||||||||||    
T  41283534 acctaaaaccttaaggcaatgagtttatgggtcctcttacttataaggtgttcaacct 41283591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 13154479 - 13154527
Alignment:
Q  251 cttataaagtgttcaacctccatttttctaaacaaagcgatacttctaa 299  Q
    |||||||||||||||||||||| |||||||| ||| | || ||||||||    
T  13154479 cttataaagtgttcaacctccacttttctaagcaatgtgagacttctaa 13154527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 29873600 - 29873664
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||| ||||||||| ||| ||||||  ||||| |||||||||| ||||||||||||| |||||||    
T  29873600 aaaaccttaaggcaatgagtttatgagtcctcccacttataaaatgttcaacctccacttttcta 29873664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 45635748 - 45635784
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaac 214  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  45635748 agcaacaatacaagtgtgttggacaccacatcttaac 45635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 40991910 - 40991749
Alignment:
Q  155 gggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctcactt 253  Q
    ||||||||| |||||| | | | |||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||||| | ||||||| |||||||||||    
T  40991910 gggatcatccacattgggcctagagcaaccacacaggtgagttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctctcactt 40991811  T
Q  254 ataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacaccttctacac 315  Q
    || |||||||||||||||| |||||||| ||| | |  |||||||| |||||| | ||||||    
T  40991810 atgaagtgttcaacctccacttttctaagcaatgtgggacttctaactcacacttcctacac 40991749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 34219215 - 34219261
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttctaa 281  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34219215 tttatggatcctctctcttataaagtgttcaacctccacttttctaa 34219261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 11442988 - 11442911
Alignment:
Q  178 agcaaccatacaagtgag-ttggacaccacatcttaacctaaaatcttaaggcattga-tttatggatcctctcactt 253  Q
    |||||||| ||||||||| ||||||||||||| || ||| |||| ||||||||||||| ||||||| |||||||||||    
T  11442988 agcaaccacacaagtgagattggacaccacatattcacccaaaaccttaaggcattgagtttatgggtcctctcactt 11442911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 4715352 - 4715281
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacac 306  Q
    ||||| |||| ||||| ||||||||||||||||||||| |||||| ||||| || | |||||||| ||||||    
T  4715352 tttatagatcgtctcatttataaagtgttcaacctccacttttcttaacaatgcaagacttctaactcacac 4715281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 4154748 - 4154793
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| |||| ||||||||||||||||||||||||| |||||||    
T  4154748 tttatgggtcctttcacttataaagtgttcaacctccacttttcta 4154793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 7480233 - 7480322
Alignment:
Q  189 aagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctcacttataaagtgttcaacctccattttt 277  Q
    ||||||||||||||||||||||  |||||||| ||||||||||| ||||| | | |  ||| | |||||||||||| |||||||| ||||    
T  7480233 aagtgagttggacaccacatctgtacctaaaaccttaaggcattagatttgtaggttttcttatttataaagtgttaaacctccactttt 7480322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 9620738 - 9620803
Alignment:
Q  216 taaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||| || | |||||||    
T  9620738 taaaatcttaaggcaatgagtttatgggtcctctcacttataaagtgatcaacttctacttttcta 9620803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 4154344 - 4154407
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||| |||||||| ||| ||||||| || ||||||||||||||||||||||||||| |||||||    
T  4154344 aaaatattaaggcaatgagtttatgggtc-tctcacttataaagtgttcaacctccacttttcta 4154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 17888193 - 17888141
Alignment:
Q  180 caaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    |||||||||||||||||| ||||||||||||| || ||||| |||||| ||||    
T  17888193 caaccatacaagtgagtttgacaccacatctttacataaaaccttaagacatt 17888141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 30737619 - 30737715
Alignment:
Q  155 gggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctca 250  Q
    |||||||||||||||| ||  | ||||||||||||| ||||||||||||| ||  |||||| |||| |||| | |||| | ||||||| ||||||||    
T  30737619 gggatcatctacattgggattagagcaaccatacaattgagttggacaccgcactttaacccaaaaccttatgacattgggtttatgggtcctctca 30737715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 11970360 - 11970297
Alignment:
Q  194 agttggacaccacatcttaacctaaaatcttaaggcattga-tttatggatcctctcacttata 256  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||| ||| ||| |||||||    
T  11970360 agttgggcaccacatcttaacccaaaatctaaaggcattgagtttatgaatcatcttacttata 11970297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 45121973 - 45122026
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||||||||| ||| ||||||  |||||| ||||||||||||||||||||    
T  45121973 aaaatcttaaggcaatgagtttatgagtcctcttacttataaagtgttcaacct 45122026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 45245130 - 45245074
Alignment:
Q  176 aaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    |||| ||||| ||||||||||| ||||||||||||| |||| ||| |||||| ||||    
T  45245130 aaagaaaccacacaagtgagtttgacaccacatcttcaccttaaaccttaagtcatt 45245074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 23210821 - 23210916
Alignment:
Q  181 aaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattgatttatggatcctctcacttataaagtgttcaacctccattttt 277  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| |||||| ||| || || | | ||||||| |||||||||| |||||||||    
T  23210821 aaccatacaagtgagttggacatcacatcttaacct-aaatcttaagacattgagttacgggtcttataacttatatagtgttcaacatccattttt 23210916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 272
Target Start/End: Complemental strand, 29802698 - 29802580
Alignment:
Q  155 gggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctcactt 253  Q
    ||||||||| |||||| | | | |||||||| ||||||||||||||||||| ||||||||  |||| ||||||||||| | ||||||| |||||||| ||    
T  29802698 gggatcatccacattgggccaagagcaaccacacaagtgagttggacaccatatcttaacacaaaaccttaaggcattgggtttatgggtcctctcagtt 29802599  T
Q  254 ataaagtgttcaacctcca 272  Q
     | ||||| ||||||||||    
T  29802598 gtcaagtgctcaacctcca 29802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 31957634 - 31957544
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggca-ttgatttatggatcctctcacttataaagtgttcaac 267  Q
    ||||||||  |||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||||| |||||||||||| | ||||||||    
T  31957634 agcaaccacgcaagtgagttggacaccacatcttaacccaaaaccttaaggcattttgtttatggattctctcacttatatattgttcaac 31957544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 41603193 - 41603314
Alignment:
Q  158 atcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggca-ttgatttatggatcctctcacttata 256  Q
    |||||| |||||| | ||||||||||||||||||||| ||| |||||| ||||| ||| |||| |||||| || |   ||||||| || |||||||||||    
T  41603193 atcatccacattgggcccaaagcaaccatacaagtgaattgtacaccaaatctttacccaaaaccttaagacactatgtttatgggtcttctcacttata 41603292  T
Q  257 aagtgttcaacctccatttttc 278  Q
    ||||| |||||||||| |||||    
T  41603293 aagtgctcaacctccacttttc 41603314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 2041215 - 2041137
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggc-attgatttatggatcctctcacttat 255  Q
    |||||||| ||||||||||||||||||||||||| ||| |||| |||||||| || |||||| || || ||||||||||    
T  2041215 agcaaccacacaagtgagttggacaccacatcttcacccaaaaccttaaggcaatggatttacgggtcatctcacttat 2041137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 31894717 - 31894663
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    |||||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  31894717 agcaaccacacaagtgaattggacacaacatcttaacctaaaaacttaaggcatt 31894663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 10452337 - 10452438
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttt 276  Q
    ||||||||||||||||||||| ||||||||| |||||  ||||  |||||||||  | ||||||| |||||||  ||||| |||||| ||| ||||||||    
T  10452337 agcaaccatacaagtgagttgaacaccacattttaactaaaaactttaaggcatgaagtttatgggtcctctcttttatatagtgttaaacatccatttt 10452436  T
Q  277 tc 278  Q
    ||    
T  10452437 tc 10452438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 760284 - 760220
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||||  ||||||| ||||||||||    
T  760284 aaaatcttaaggcaatgagtttatgggtcctctcacttataaagttctcaaccttcatttttcta 760220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 272
Target Start/End: Original strand, 11348410 - 11348445
Alignment:
Q  237 tatggatcctctcacttataaagtgttcaacctcca 272  Q
    ||||||||||||||||||||||||||||||||||||    
T  11348410 tatggatcctctcacttataaagtgttcaacctcca 11348445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 15841448 - 15841493
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||| ||||||||||||| ||||||||||||||||| |||||||    
T  15841448 tttatgaatcctctcacttacaaagtgttcaacctccacttttcta 15841493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 28034305 - 28034260
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||    
T  28034305 tttatgggttctctcacttataaagtgttcaacctccacttttcta 28034260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 7147730 - 7147792
Alignment:
Q  243 tcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacac 306  Q
    |||||||||||| ||||||||||||||||| |||||||| ||| | || |||||||| ||||||    
T  7147730 tcctctcactta-aaagtgttcaacctccacttttctaagcaatgtgagacttctaactcacac 7147792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 9965979 - 9965910
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcattg-atttatggatcctctcacttata 256  Q
    |||||||||||||||||||||||| || | ||||||||||  ||||| ||||||| |||||||||| ||||    
T  9965979 acaagtgagttggacaccacatctcaaac-aaaatcttaatccattgaatttatgtatcctctcacatata 9965910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 14134218 - 14134300
Alignment:
Q  218 aaatcttaaggcatt-gatttatggatcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaa 299  Q
    ||||||||||| ||| ||||| || ||||||||||||||||| || ||||| |  ||||||||| |||| | |||||||||||    
T  14134218 aaatcttaaggtattcgatttgtgtatcctctcacttataaattgctcaacattaatttttctatacaatgtgatacttctaa 14134300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 15841064 - 15841109
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||| |||||||||||||||||| |||||| |||||| |||||||    
T  15841064 tttatagatcctctcacttataaaatgttcagcctccacttttcta 15841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 35648518 - 35648563
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    ||||||||| | ||||||||||||| || |||||||||||||||||    
T  35648518 acaagtgagattgacaccacatctttacgtaaaatcttaaggcatt 35648563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 30788352 - 30788288
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatgg 241  Q
    ||||||||  ||| ||||||| |||||||||||||||| |||| |||||| |||| |||||||||    
T  30788352 agcaaccactcaattgagttgaacaccacatcttaacccaaaaccttaagacattggatttatgg 30788288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 52885001 - 52884929
Alignment:
Q  199 gacaccacat-cttaacctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||||| |||| || |||| ||||||||| ||  |||||||||||||| |||||||| |||||||||||    
T  52885001 gacaccacattcttaccccaaaaccttaaggcaatgggtttatggatcctcttacttataaggtgttcaacct 52884929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 6071227 - 6071163
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  6071227 aaaatcttaaggcaatgagtttatggatcatctcacttataaagtgttcaacctccacttttcta 6071163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 280
Target Start/End: Original strand, 12092545 - 12092609
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||| |||||||    
T  12092545 aaaaccttaaggcaatgagtttatggatcctctcacttataaagtgctcaacctccacttttcta 12092609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 28033239 - 28033322
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcattgatttatggatcctctcacttataaagtgttcaacctc 270  Q
    |||||| ||||||||||  | |||||||| |||||||||||| |||||||||||| || ||  |||||||||||||||| ||||    
T  28033239 acaagttagttggacactgcgtcttaacccaaaatcttaaggtattgatttatgggtcttcgtacttataaagtgttcagcctc 28033322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 34900624 - 34900669
Alignment:
Q  176 aaagcaaccatacaagtgagttggacaccacatcttaacctaaaat 221  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  34900624 aaagcaaccacacaagtgagttggacaccacatcttcacctaaaat 34900669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 20848452 - 20848353
Alignment:
Q  180 caaccatacaagtgagttggacaccacatctt-aacctaaaatcttaaggcattg-atttatggatcctctcacttataaagtgttcaacctccattttt 277  Q
    |||||| |||| |||||| |||||||||| || || | | ||||||||| ||||| |||||||  |||||| ||||||||| ||||||||||||||||||    
T  20848452 caaccacacaaatgagtttgacaccacatttttaatccagaatcttaagacattggatttatgcgtcctcttacttataaaatgttcaacctccattttt 20848353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 29028222 - 29028188
Alignment:
Q  180 caaccatacaagtgagttggacaccacatcttaac 214  Q
    ||||||||||||| |||||||||||||||||||||    
T  29028222 caaccatacaagtaagttggacaccacatcttaac 29028188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 3624890 - 3624849
Alignment:
Q  192 tgagttggacaccacatcttaacctaaaatcttaaggcattg 233  Q
    ||||||||||||||| |||||||| ||||| |||||||||||    
T  3624890 tgagttggacaccacgtcttaacccaaaattttaaggcattg 3624849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 5034845 - 5034946
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattgattt-atggatcctctcacttataaagtgttcaacctccatttt 276  Q
    |||||||| |||||||| ||| |||||| || || | | |||| |||||  |||||| || |||| || |||||||||||||||| |||||||||| |||    
T  5034845 agcaaccacacaagtgaattgtacaccatatttttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccacttt 5034944  T
Q  277 tc 278  Q
    ||    
T  5034945 tc 5034946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 8482021 - 8481960
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccattttt 277  Q
    |||||||||||||| ||| ||||||  || ||||| ||||||||||||||||||||| ||||    
T  8482021 aaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactttt 8481960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 10073679 - 10073732
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    ||||||||||| || ||| |||||||||||||| |||||||| |||||||||||    
T  10073679 aaaatcttaagccaatgagtttatggatcctcttacttataaggtgttcaacct 10073732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 405056 - 405104
Alignment:
Q  189 aagtgagttggacaccacatcttaacctaaaatcttaaggcattgattt 237  Q
    |||||||||| |||||||| ||||||||||||  ||||||| |||||||    
T  405056 aagtgagttgaacaccacaccttaacctaaaactttaaggctttgattt 405104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 34661633 - 34661737
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattg-atttatggatcctctcacttataaagtgttcaacctccatttt 276  Q
    ||||||||||||||||||   | |||||||  ||||| ||||| |||||| || |  || ||||| | |||| |||||||||||| |||||||||| |||    
T  34661633 agcaaccatacaagtgagacagccaccacactttaacgtaaaaccttaagacaatatatgtatgggttctcttacttataaagtgatcaacctccacttt 34661732  T
Q  277 tctaa 281  Q
    |||||    
T  34661733 tctaa 34661737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 7373410 - 7373339
Alignment:
Q  185 atacaagtgagttggacaccacatcttaacctaaaatcttaaggcattgatttatggatcctctcacttata 256  Q
    ||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||| || | |||||||||||    
T  7373410 atacaagtgagttggacaccacatcttaaccaaaaattttaagacattcatttatagaccttctcacttata 7373339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 8240365 - 8240467
Alignment:
Q  156 ggatcatctacattgagaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatct-taaggcatt-gatttatggatcctctcactt 253  Q
    ||||||| ||||||||| | | | ||| |||||||||||||||||||||||||||||||| |||| ||  |||||||| || |||| |||||| ||||||    
T  8240365 ggatcatttacattgagtcaagaacaatcatacaagtgagttggacaccacatcttaacccaaaacctgaaaggcattggacttattgatcctttcactt 8240464  T
Q  254 ata 256  Q
    |||    
T  8240465 ata 8240467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 10351236 - 10351191
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||    
T  10351236 tttatgggttctctcacttataaagtgttcaacctctatttttcta 10351191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 12772971 - 12772902
Alignment:
Q  213 acctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttctaa 281  Q
    |||||||| |||||| || ||| ||||||||| ||||||||||||||| |||||||||| | ||||||||    
T  12772971 acctaaaaccttaagacaatgaatttatggattctctcacttataaagcgttcaacctcaagttttctaa 12772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 22793354 - 22793309
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||    
T  22793354 tttatggatcctctcacttataaagttttcaacctctacttttcta 22793309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 3808928 - 3808975
Alignment:
Q  176 aaagcaaccatacaagtgagttggacaccacatcttaacctaaaatct 223  Q
    |||||||| |||||||||||||||||||||||| || ||| |||||||    
T  3808928 aaagcaactatacaagtgagttggacaccacatgttcacccaaaatct 3808975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 3458684 - 3458730
Alignment:
Q  234 atttatggatcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  3458684 atttatggatcatctcatttataacgtgctcaacctccatttttcta 3458730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 31503443 - 31503485
Alignment:
Q  184 catacaagtgagttggacaccacatcttaacctaaaatcttaa 226  Q
    |||| ||||||||| |||||||||||||||| |||||||||||    
T  31503443 catataagtgagttagacaccacatcttaacttaaaatcttaa 31503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 26661585 - 26661638
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||| ||||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  26661585 aaaaccttaaggcaatgagtttatgggtcctctcacttataaggtgttcaacct 26661638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 44091972 - 44091936
Alignment:
Q  233 gatttatggatcctctcacttataaagtgttcaacct 269  Q
    ||||||||| | |||||||||||||||||||||||||    
T  44091972 gatttatgggttctctcacttataaagtgttcaacct 44091936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 45717833 - 45717911
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggca-ttgatttatggatcctctcacttat 255  Q
    ||||||||||||||| |||||||||||||||||| ||  |||| | ||||||| |||||||||||||| ||||||||||    
T  45717833 agcaaccatacaagtaagttggacaccacatcttcactcaaaaccctaaggcatttgatttatggatcatctcacttat 45717911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 50329356 - 50329428
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctc 249  Q
    |||||||| ||||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||| |||||||    
T  50329356 agcaaccaaacaagtgagtttgacaccacgtcttaacccaaaaccttaaggcattggatttatgggtcctctc 50329428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 39336311 - 39336348
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctcca 272  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39336311 tttatggatcctctcacttataaagtgttcaacctcca 39336348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 298
Target Start/End: Complemental strand, 41857560 - 41857437
Alignment:
Q  176 aaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatt 274  Q
    |||||||||| |||||||||||| ||| |||||||||||| ||||  ||||| |||||| ||||||| |  | ||| ||||||| |||| |||||| ||     
T  41857560 aaagcaaccacacaagtgagttgaacatcacatcttaacccaaaactttaagtcattgagtttatgggtgttatcatttataaaatgttaaacctctata 41857461  T
Q  275 tttctaaacaaagcgatacttcta 298  Q
    ||||| ||||| | || |||||||    
T  41857460 tttcttaacaatgtgaaacttcta 41857437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 54451260 - 54451302
Alignment:
Q  237 tatggatcctctcacttataaagtgttcaacctccatttttct 279  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  54451260 tatggatcatctcactcataaagtgttcaacctccatttttct 54451302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 30399662 - 30399706
Alignment:
Q  241 gatcctctcacttataaagtgttcaacctccatttttctaaacaa 285  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||    
T  30399662 gatcctctcacttataaaatgttcaacctccaattttttaaacaa 30399706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 2417412 - 2417322
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttctaaacaaagcgatacttctaattcacac 306  Q
    |||| ||||| ||||||| ||||| ||| |||||||||||||| ||||||| ||||| |||||||| |||   || |||||||| ||||||    
T  2417412 aaaaccttaaagcattgagtttatagattctctcacttataaaatgttcaatctccacttttctaagcaacaagagacttctaactcacac 2417322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 12749250 - 12749208
Alignment:
Q  230 attgatttatggatcctctcacttataaagtgttcaacctcca 272  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||    
T  12749250 attggtttatgggtcctcacacttataaagtgttcaacctcca 12749208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 46546407 - 46546444
Alignment:
Q  235 tttatggatcctctcacttataaagtgttcaacctcca 272  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  46546407 tttatggattctctaacttataaagtgttcaacctcca 46546444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 53118038 - 53118090
Alignment:
Q  217 aaaatcttaaggcattgatttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||||||||| ||  || || |||||||||||||||| |||||||||||    
T  53118038 aaaatcttaaggcaatgggttttgaatcctctcacttataaggtgttcaacct 53118090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 23714886 - 23714939
Alignment:
Q  180 caaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattg 233  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  23714886 caaccacacaagtgagttggacaccacatcttcacccaaaatcttaaggcattg 23714939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 32567962 - 32568017
Alignment:
Q  177 aagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    |||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||    
T  32567962 aagcaaccatgcaagtggattggacaccacatcttaacctaaaaccttaaggcatt 32568017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 3114462 - 3114564
Alignment:
Q  176 aaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatt 274  Q
    ||||||||||||||||||||||||||||||||  |||| | ||||| |||| ||||| | || |||| |   || ||||||||| |||||||||| ||||    
T  3114462 aaagcaaccatacaagtgagttggacaccacactttaatccaaaatattaaagcatttagttcatgggtttccttacttataaattgttcaaccttcatt 3114561  T
Q  275 ttt 277  Q
    |||    
T  3114562 ttt 3114564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 42282101 - 42282147
Alignment:
Q  236 ttatggatcctctcacttataaagtgttcaacctccatttttctaaa 282  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||    
T  42282101 ttatgggtcctttcacttataaagtgttcaacctccacttttctaaa 42282147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 18290409 - 18290461
Alignment:
Q  180 caaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    |||||||||||||||| | ||||||||||||| || ||||| |||||| ||||    
T  18290409 caaccatacaagtgagattgacaccacatctttacataaaaccttaagacatt 18290461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 41498 - 41598
Alignment:
Q  178 agcaaccatacaagtgagttggacaccacatc-ttaacctaaaatcttaaggcattgatttatggatcctctcacttat-aaagtgttcaacctccattt 275  Q
    ||||||||||||||| ||||||| |||||||| |||||| |||| |||||||| | |||| || | |  |||||||||| ||| ||||||||||||||||    
T  41498 agcaaccatacaagttagttggataccacatctttaacccaaaaccttaaggcttagattgatag-ttttctcacttataaaaatgttcaacctccattt 41596  T
Q  276 tt 277  Q
    ||    
T  41597 tt 41598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 2828156 - 2828083
Alignment:
Q  210 ttaacctaaaatcttaaggcatt-gatttatggatcctctcacttataaagtgttcaacctccatttttctaaa 282  Q
    |||||| |||| ||||||||||| || ||||||||  | ||||||||||||||| ||||||||| |||||||||    
T  2828156 ttaacccaaaaccttaaggcattagacttatggattatttcacttataaagtgtacaacctccacttttctaaa 2828083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 26590973 - 26591026
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||| ||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  26590973 aaaaccttaaggcattgaatttatggatcctcttacttataaggtgttcaacct 26591026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 6557471 - 6557514
Alignment:
Q  238 atggatcctctcacttataaagtgttcaacctccatttttctaa 281  Q
    |||||||||||||||||||||||| ||||||| || ||||||||    
T  6557471 atggatcctctcacttataaagtgctcaacctacacttttctaa 6557514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 280
Target Start/End: Original strand, 9510537 - 9510647
Alignment:
Q  171 agaccaaagcaaccatacaagtgagttggacaccacatcttaacctaaaatcttaaggcatt-gatttatggatcctctcacttataaagtgttcaacct 269  Q
    |||| |||||||||| |||||| ||   ||||| | || || ||||||||| |||||||||| | ||||||| ||||||||||||||||    |||||||    
T  9510537 agacaaaagcaaccacacaagtaagagagacactatatttttacctaaaattttaaggcattaggtttatggctcctctcacttataaatgactcaacct 9510636  T
Q  270 ccatttttcta 280  Q
    ||| |||||||    
T  9510637 ccacttttcta 9510647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 31509691 - 31509654
Alignment:
Q  243 tcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  31509691 tcctctcacttataaagtgctcaacctccacttttcta 31509654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 31509799 - 31509762
Alignment:
Q  243 tcctctcacttataaagtgttcaacctccatttttcta 280  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  31509799 tcctctcacttataaagtgctcaacctccacttttcta 31509762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 33747866 - 33747813
Alignment:
Q  217 aaaatcttaaggcattga-tttatggatcctctcacttataaagtgttcaacct 269  Q
    |||||||||||||| ||| |||||||||||||| ||||||||||| || |||||    
T  33747866 aaaatcttaaggcaatgagtttatggatcctcttacttataaagtatttaacct 33747813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 36522327 - 36522364
Alignment:
Q  243 tcctctcacttataaagtgttcaacctccatttttcta 280  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  36522327 tcctctcacttataaaatgttcaacttccatttttcta 36522364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1782 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 1365 - 1320
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    ||||||||| | ||||||||||||| || |||||||||||||||||    
T  1365 acaagtgagattgacaccacatcttcacgtaaaatcttaaggcatt 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 130 - 85
Alignment:
Q  187 acaagtgagttggacaccacatcttaacctaaaatcttaaggcatt 232  Q
    ||||||||| | ||||||||||||| || |||||||||||||||||    
T  130 acaagtgagattgacaccacatctttacgtaaaatcttaaggcatt 85  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 3168 - 3107
Alignment:
Q  222 cttaaggcattga-tttatggatcctctcacttataaagtgttcaacctccatttttctaaa 282  Q
    ||||||||| ||| ||||| ||| ||||||||||||||||||  |||||||| |||||||||    
T  3168 cttaaggcaatgagtttattgatgctctcacttataaagtgtataacctccacttttctaaa 3107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University