View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1612_low_1 (Length: 1046)

Name: NF1612_low_1
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1612_low_1
NF1612_low_1
[»] chr6 (5 HSPs)
chr6 (159-1037)||(2385918-2386795)
chr6 (815-863)||(24333044-24333092)
chr6 (816-857)||(3525236-3525277)
chr6 (818-859)||(4308887-4308928)
chr6 (818-855)||(31776191-31776228)
[»] chr5 (4 HSPs)
chr5 (110-159)||(5770876-5770925)
chr5 (820-867)||(18286893-18286940)
chr5 (817-859)||(3280654-3280696)
chr5 (816-857)||(32197845-32197886)
[»] chr2 (6 HSPs)
chr2 (817-859)||(37276854-37276896)
chr2 (818-859)||(37419586-37419627)
chr2 (817-859)||(1830149-1830191)
chr2 (817-863)||(15370241-15370287)
chr2 (819-856)||(40059381-40059418)
chr2 (819-856)||(40085281-40085318)
[»] chr4 (8 HSPs)
chr4 (816-849)||(28615454-28615487)
chr4 (816-859)||(679401-679444)
chr4 (816-863)||(41433481-41433528)
chr4 (818-861)||(53034718-53034761)
chr4 (817-859)||(22662169-22662211)
chr4 (817-859)||(22666648-22666690)
chr4 (816-857)||(27043747-27043788)
chr4 (818-851)||(52428782-52428815)
[»] chr3 (4 HSPs)
chr3 (816-857)||(25447162-25447203)
chr3 (816-857)||(36507009-36507050)
chr3 (816-858)||(47903997-47904039)
chr3 (820-857)||(26911703-26911740)
[»] chr8 (2 HSPs)
chr8 (820-863)||(39551130-39551173)
chr8 (816-849)||(10727464-10727497)
[»] chr7 (4 HSPs)
chr7 (816-863)||(28691753-28691800)
chr7 (816-863)||(41040271-41040318)
chr7 (820-857)||(9210933-9210970)
chr7 (816-857)||(37064385-37064426)
[»] chr1 (4 HSPs)
chr1 (824-863)||(4200340-4200379)
chr1 (817-867)||(37241739-37241788)
chr1 (818-859)||(6292602-6292643)
chr1 (816-849)||(30013996-30014029)


Alignment Details
Target: chr6 (Bit Score: 827; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 827; E-Value: 0
Query Start/End: Original strand, 159 - 1037
Target Start/End: Original strand, 2385918 - 2386795
Alignment:
Q  159 aaactataaatagtaatttagtaaatgtaaatttatgtgtatgaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt 258  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2385918 aaactataaatagtaatttagtaaatgtaaatttatgtgtaagaaagtgtaacttactctagttccacattttcagacttgtcatttggtagagtaattt 2386017  T
Q  259 cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggcttcttatcttgaagatcatcatcatcttgttctttatacga 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2386018 cacaatggaagcatttcaatgcagattctttaatacttttaaacattttcgtgaaaggctttttatcttgaagatcatcatcatcttgttctttatacga 2386117  T
Q  359 atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatagcaaaccctattacccaaccaaatgtatcttggatgtaa 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2386118 atatatagagcttccactagagaaaatcaagatagaaagaagcatcgaaatcgcaggtatcgcaaaccctattacccaaccaaatgtatcttggatgtaa 2386217  T
Q  459 gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttac 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386218 gacatgactgttacacccattaggcttccagcacaaacaccaaaataccaccattgaaagaaaagtgcttttttgttgctacttgtatcatctgtgttac 2386317  T
Q  559 tacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataa 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386318 tacaaggtagttcttcatcttcaccaagttgatcagctccaaaggcttgtagagatggattatatccaccttggcctaatgagattaaatagagagataa 2386417  T
Q  659 tgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaa 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386418 tgaaagaaatgaagatgacattgatctgtttttgtgatgccatgatcttgctagggctgttgttgtcaatgctgcaagtccctataggaagaaaacacaa 2386517  T
Q  759 gaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctactgatataagc 858  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  |||    
T  2386518 gaaaaaatgtcaataactagtgaagaaaaagttgaatattcaaattaacagtaactttctgtttggattgacttatttaagtttatctacaga-aacagc 2386616  T
Q  859 atttgcgagcctttttgagaatatacagaaacagcttaaaaaatatccatgtgtagttttcagcttactttcataagccctcaaggactagcttatgata 958  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2386617 atttgcgagcctttttgagaatatacagaaacagcttaaaaaatgtccattcgtagttttcagcttactttcataagccctcaaggactagcttatgata 2386716  T
Q  959 acatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtggatgatgtccat 1037  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2386717 acatcttatatgaattgtgtgtttctcaaattagtagcattgtcgttgtgtcagtgtctgtgtcgtgtctgatgtccat 2386795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 815 - 863
Target Start/End: Complemental strand, 24333092 - 24333044
Alignment:
Q  815 ttctgtttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    |||||||||||||||| ||||| ||||||| |||||| |||||||||||    
T  24333092 ttctgtttggattgacatatttcagtttatgtactgacataagcatttg 24333044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 857
Target Start/End: Complemental strand, 3525277 - 3525236
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    |||||||||||||||| ||||||||||||||| ||| |||||    
T  3525277 tctgtttggattgactaatttaagtttatctagtgacataag 3525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 859
Target Start/End: Complemental strand, 4308928 - 4308887
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactgatataagca 859  Q
    ||||||||||| ||||||| |||||||||||||| |||||||    
T  4308928 tgtttggattggcttatttgagtttatctactgacataagca 4308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 855
Target Start/End: Original strand, 31776191 - 31776228
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactgatata 855  Q
    ||||||||||||||||||| || |||||||||||||||    
T  31776191 tgtttggattgacttatttgagcttatctactgatata 31776228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 5770925 - 5770876
Alignment:
Q  110 ctttcgtgatgttatcgtgaaatctttgtcgtgatgtatagcaattctca 159  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  5770925 ctttcgtgatgttatggtgaaatctttgtcgcgatgtatagcaattctca 5770876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 867
Target Start/End: Complemental strand, 18286940 - 18286893
Alignment:
Q  820 tttggattgacttatttaagtttatctactgatataagcatttgcgag 867  Q
    |||||||||| |||||  |||||||||||| |||||||||||||||||    
T  18286940 tttggattgaattattcgagtttatctactaatataagcatttgcgag 18286893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 859
Target Start/End: Original strand, 3280654 - 3280696
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    ||||||||||||||||||||||  |||||||||||| ||||||    
T  3280654 ctgtttggattgacttatttaaacttatctactgatttaagca 3280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 857
Target Start/End: Complemental strand, 32197886 - 32197845
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  32197886 tctgtttggattgacttttttgagtttatctactgacataag 32197845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 817 - 859
Target Start/End: Complemental strand, 37276896 - 37276854
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  37276896 ctgtttggatcgacttatttaagtttatctactaatataagca 37276854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 818 - 859
Target Start/End: Original strand, 37419586 - 37419627
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactgatataagca 859  Q
    ||||||||||||||||||| |||||||||||| |||||||||    
T  37419586 tgtttggattgacttatttgagtttatctacttatataagca 37419627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 859
Target Start/End: Complemental strand, 1830191 - 1830149
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    |||||||||||||||||||| ||||||| |||||| |||||||    
T  1830191 ctgtttggattgacttatttgagtttatttactgacataagca 1830149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 863
Target Start/End: Original strand, 15370241 - 15370287
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    |||||||||||||||||||| || ||||||||||  |||||||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttg 15370287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 856
Target Start/End: Original strand, 40059381 - 40059418
Alignment:
Q  819 gtttggattgacttatttaagtttatctactgatataa 856  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40059381 gtttggattgacttatttgagtttatctactgacataa 40059418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 819 - 856
Target Start/End: Original strand, 40085281 - 40085318
Alignment:
Q  819 gtttggattgacttatttaagtttatctactgatataa 856  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  40085281 gtttggattgacttatttgagtttatctactgacataa 40085318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 849
Target Start/End: Complemental strand, 28615487 - 28615454
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctact 849  Q
    ||||||||||||||||||||||||||||||||||    
T  28615487 tctgtttggattgacttatttaagtttatctact 28615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 859
Target Start/End: Complemental strand, 679444 - 679401
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||    
T  679444 tctgtttgaattgacttatttgagtttatctactggtataagca 679401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 41433528 - 41433481
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    |||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  41433528 tctgtttgaattgacttatttgagtttatctcctgacataagcatttg 41433481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 861
Target Start/End: Original strand, 53034718 - 53034761
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactgatataagcatt 861  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  53034718 tgtttggtttgacttatttgagcttatctactgatataagcatt 53034761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 859
Target Start/End: Original strand, 22662169 - 22662211
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22662169 ctgtttggattgacttatttgagtttatctactaacataagca 22662211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 859
Target Start/End: Original strand, 22666648 - 22666690
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagca 859  Q
    |||||||||||||||||||| |||||||||||| | |||||||    
T  22666648 ctgtttggattgacttatttgagtttatctactaacataagca 22666690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 857
Target Start/End: Original strand, 27043747 - 27043788
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||||||| || ||||||||||| |||||    
T  27043747 tctgtttggattgacttatttgagcttatctactgacataag 27043788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 851
Target Start/End: Complemental strand, 52428815 - 52428782
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactga 851  Q
    ||||||||||||||||||| ||||||||||||||    
T  52428815 tgtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 857
Target Start/End: Original strand, 25447162 - 25447203
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  25447162 tctgtttggattgacttatttgagtttatctactgacataag 25447203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 816 - 857
Target Start/End: Original strand, 36507009 - 36507050
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  36507009 tctgtttggattggcttatttgagtttatctactgatataag 36507050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 816 - 858
Target Start/End: Original strand, 47903997 - 47904039
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataagc 858  Q
    ||||||||||||||||||||| ||||||||  |||||||||||    
T  47903997 tctgtttggattgacttatttgagtttatcctctgatataagc 47904039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 857
Target Start/End: Complemental strand, 26911740 - 26911703
Alignment:
Q  820 tttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  26911740 tttggattgacttatttgagtttatctactgacataag 26911703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 820 - 863
Target Start/End: Original strand, 39551130 - 39551173
Alignment:
Q  820 tttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    ||||||||||||||||| || |||||||| ||||||||||||||    
T  39551130 tttggattgacttatttgagattatctacggatataagcatttg 39551173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 849
Target Start/End: Complemental strand, 10727497 - 10727464
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctact 849  Q
    ||||||||||||||||||||| ||||||||||||    
T  10727497 tctgtttggattgacttatttgagtttatctact 10727464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Original strand, 28691753 - 28691800
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||    
T  28691753 tctgtttggattgacttatttgagtttatctgctaacataagcatttg 28691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 863
Target Start/End: Complemental strand, 41040318 - 41040271
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataagcatttg 863  Q
    |||||||| ||||| |||||| |||||||||||||||||||| |||||    
T  41040318 tctgtttgaattgatttatttgagtttatctactgatataagtatttg 41040271  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 820 - 857
Target Start/End: Complemental strand, 9210970 - 9210933
Alignment:
Q  820 tttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9210970 tttggattgacttatttgagcttatctactgatataag 9210933  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 857
Target Start/End: Original strand, 37064385 - 37064426
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctactgatataag 857  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  37064385 tctgtttggattgacttatttgatcttatctactgatataag 37064426  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 824 - 863
Target Start/End: Complemental strand, 4200379 - 4200340
Alignment:
Q  824 gattgacttatttaagtttatctactgatataagcatttg 863  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4200379 gattgacttattttagtttatatactgatataagcatttg 4200340  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 817 - 867
Target Start/End: Original strand, 37241739 - 37241788
Alignment:
Q  817 ctgtttggattgacttatttaagtttatctactgatataagcatttgcgag 867  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| |||||||    
T  37241739 ctgtttggattgacttatttaagcttatctactg-cataagcacttgcgag 37241788  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 818 - 859
Target Start/End: Complemental strand, 6292643 - 6292602
Alignment:
Q  818 tgtttggattgacttatttaagtttatctactgatataagca 859  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagca 6292602  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 816 - 849
Target Start/End: Original strand, 30013996 - 30014029
Alignment:
Q  816 tctgtttggattgacttatttaagtttatctact 849  Q
    ||||||||||||||||||||| ||||||||||||    
T  30013996 tctgtttggattgacttatttgagtttatctact 30014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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