View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1612_low_11 (Length: 223)

Name: NF1612_low_11
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1612_low_11
NF1612_low_11
[»] scaffold0054 (1 HSPs)
scaffold0054 (25-206)||(28466-28647)
[»] chr3 (2 HSPs)
chr3 (25-205)||(54076984-54077164)
chr3 (154-198)||(7567298-7567342)
[»] chr7 (4 HSPs)
chr7 (30-205)||(1723616-1723791)
chr7 (50-206)||(13796282-13796437)
chr7 (25-205)||(18535990-18536174)
chr7 (25-205)||(12315145-12315328)
[»] chr4 (2 HSPs)
chr4 (30-205)||(13757322-13757497)
chr4 (25-205)||(18810873-18811057)
[»] chr2 (4 HSPs)
chr2 (26-205)||(44481642-44481825)
chr2 (26-92)||(24079242-24079308)
chr2 (105-175)||(24079328-24079397)
chr2 (155-197)||(25546440-25546482)
[»] scaffold0214 (1 HSPs)
scaffold0214 (154-198)||(22041-22085)
[»] chr5 (1 HSPs)
chr5 (156-198)||(22545505-22545547)


Alignment Details
Target: scaffold0054 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 28466 - 28647
Alignment:
Q  25 gggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattgactttgattgggtaaagattagagaaat 124  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||| |||||||||  ||||||||| ||||||||||| ||||    
T  28466 gggataaaaaagattagacaaatgcaataagagagagggaaattgggtaaagagggagcttttttttaattggttttgattggataaagattagacaaat 28565  T
Q  125 gcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaact 206  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  28566 gcaaaaagcattaaacagtagtcaataaaggtttttgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaact 28647  T

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Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 54077164 - 54076984
Alignment:
Q  25 gggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattgactttgattgggtaaagattagagaaat 124  Q
    |||||||||||| |||||||| |||||||||||| ||||||||||| |||||||||  |||||||||||  | |||||||||||||||||||||| ||||    
T  54077164 gggataaaaaagtttagacaaatgcaataagagagagggaaattgggtaaagagggtgctttcttttaaccggctttgattgggtaaagattagacaaat 54077065  T
Q  125 gcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
     ||||||| |||||| |||||||||||||||| |  |||||||||||||||| ||| ||||||||||||||||||||||||    
T  54077064 acaaaaaggattaaatggtaatcaataaaggtataggtaaattgtgttagcaatgggaaagatttaatgtcttcgtgaaac 54076984  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 7567342 - 7567298
Alignment:
Q  154 ggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttc 198  Q
    |||||||||||||| |||||||| ||| ||||||||||| |||||    
T  7567342 ggtttctgtaaattatgttagcactgggaaagatttaatatcttc 7567298  T

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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 1723791 - 1723616
Alignment:
Q  30 aaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattgactttgattgggtaaagattagagaaatgcaaa 129  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||||||  |||||||||||  |||||||||||||||||||||||| |||| ||||    
T  1723791 aaaaaagattagacaaatgcaataagagatagggaaattgggtaaagagggtgctttcttttaaccgactttgattgggtaaagattagacaaatacaaa 1723692  T
Q  130 aagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
    ||| ||||||  |||||||||||||||||  |||||||||||||||||| | ||||||||||||| ||||||||||    
T  1723691 aaggattaaattgtaatcaataaaggtttacgtaaattgtgttagcagtaggaaagatttaatgttttcgtgaaac 1723616  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 13796282 - 13796437
Alignment:
Q  50 aataagagaaagggaaattggataaagagggacctttcttttaattgactttgattgggtaaagattagagaaatgcaaaaagcattaaacggtaatcaa 149  Q
    ||||||||  ||||||||||| |||||||||| ||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||| |||| ||||    
T  13796282 aataagagtgagggaaattgggtaaagagggagctttcttttaattggttttgattgggtaaagattagacaaatgcaaaaagcattaaatggtagtcaa 13796381  T
Q  150 taaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaact 206  Q
    ||||||||| ||| ||||||| |||  |||| |||||||||||||||||||||||||    
T  13796382 taaaggtttttgtcaattgtg-taggggtgggaaagatttaatgtcttcgtgaaact 13796437  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 18536174 - 18535990
Alignment:
Q  25 gggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattg-----actttgattgggtaaagattaga 119  Q
    |||||||||| |||||||||| |||||||||||| ||| | ||||| |||||||||| |||||||||||| |     |   ||| ||||| || ||||||    
T  18536174 gggataaaaatgattagacaaatgcaataagagagaggtagattgggtaaagagggagctttcttttaataggagagatggtgaatgggtgaatattaga 18536075  T
Q  120 gaaatgcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
     |||||||||||| |||||||  |||||||||||||||| | |||||||||||||| || | ||||||||| ||||||||||||||    
T  18536074 caaatgcaaaaag-attaaactctaatcaataaaggtttttataaattgtgttagcggtaggaaagatttattgtcttcgtgaaac 18535990  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 12315328 - 12315145
Alignment:
Q  25 gggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattg-----actttgattgggtaaagattaga 119  Q
    |||||||||| |||||||||| |||||||||||| |||   ||||||||||||||||  ||||||||||  |     |    || ||||| || ||||||    
T  12315328 gggataaaaatgattagacaaatgcaataagagagaggtgcattggataaagagggag-tttcttttaacaggagagatggagaatgggtgaatattaga 12315230  T
Q  120 gaaatgcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
     |||||||||||| ||||||| ||||||||||||||||| | ||||||| |||||| || | ||||||||| ||||||||||||||    
T  12315229 caaatgcaaaaag-attaaactgtaatcaataaaggtttttataaattgggttagcggtaggaaagatttattgtcttcgtgaaac 12315145  T

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Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 13757497 - 13757322
Alignment:
Q  30 aaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattgactttgattgggtaaagattagagaaatgcaaa 129  Q
    ||||||||| |||||| |||||||||||| ||||||||||| |||||||||  |||||||||||  |||||||||||||||||||||||| |||| ||||    
T  13757497 aaaaaagatcagacaaatgcaataagagatagggaaattgggtaaagagggtgctttcttttaaccgactttgattgggtaaagattagacaaatacaaa 13757398  T
Q  130 aagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
    ||| ||||||  |||||||||||||||||  |||||||||||||||||| | ||||||||||||| ||||||||||    
T  13757397 aaggattaaatagtaatcaataaaggtttacgtaaattgtgttagcagtaggaaagatttaatgtattcgtgaaac 13757322  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 18810873 - 18811057
Alignment:
Q  25 gggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattg-----actttgattgggtaaagattaga 119  Q
    |||||||||| |||||||||| |||||||| ||| ||| | ||||| |||||||||| |||| ||||||| |     |    || ||||| || |||||     
T  18810873 gggataaaaatgattagacaaatgcaataatagagaggtagattgggtaaagagggagcttttttttaataggagagatggagaatgggtgaatattagt 18810972  T
Q  120 gaaatgcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
     |||||||||||| ||||||| ||||||||||||||||| | |||||||||||||| || | ||||||||| ||||||||||||||    
T  18810973 caaatgcaaaaag-attaaactgtaatcaataaaggtttttataaattgtgttagcggtaggaaagatttattgtcttcgtgaaac 18811057  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 44481825 - 44481642
Alignment:
Q  26 ggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttcttttaattg-----actttgattgggtaaagattagag 120  Q
    ||||||||| |||||||||| |||||||||||| ||| | || || |||||||||| |||||||||||| |     |    || ||||| || ||||||     
T  44481825 ggataaaaatgattagacaaatgcaataagagagaggtagatcgggtaaagagggagctttcttttaataggagagatggagaatgggtgaatattagac 44481726  T
Q  121 aaatgcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttcgtgaaac 205  Q
    |||||||||||| ||||||  ||||||||||||||||| | |||||||||||||| || | ||||||||| ||||||||||||||    
T  44481725 aaatgcaaaaag-attaaattgtaatcaataaaggtttttataaattgtgttagcggtaggaaagatttattgtcttcgtgaaac 44481642  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 24079242 - 24079308
Alignment:
Q  26 ggataaaaaagattagacaagtgcaataagagaaagggaaattggataaagagggacctttctttta 92  Q
    ||||||||| |||||||||| |||||||||||| ||| | ||||| |||||||||| ||||||||||    
T  24079242 ggataaaaatgattagacaaatgcaataagagagaggtagattgggtaaagagggagctttctttta 24079308  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 24079328 - 24079397
Alignment:
Q  105 tgggtaaagattagagaaatgcaaaaagcattaaacggtaatcaataaaggtttctgtaaattgtgttagc 175  Q
    ||||| || |||||| |||||||||||| ||||||| | ||||||||||||||| | |||||||| |||||    
T  24079328 tgggtgaatattagacaaatgcaaaaag-attaaactgcaatcaataaaggtttttataaattgtcttagc 24079397  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 25546482 - 25546440
Alignment:
Q  155 gtttctgtaaattgtgttagcagtggaaaagatttaatgtctt 197  Q
    |||||||||||||||||||||| ||| |||||||||| |||||    
T  25546482 gtttctgtaaattgtgttagcactgggaaagatttaaagtctt 25546440  T

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Target: scaffold0214 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 22085 - 22041
Alignment:
Q  154 ggtttctgtaaattgtgttagcagtggaaaagatttaatgtcttc 198  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||    
T  22085 ggtttctgtaaatcgtgttagcgctggaaaagatttaatgtcttc 22041  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 22545505 - 22545547
Alignment:
Q  156 tttctgtaaattgtgttagcagtggaaaagatttaatgtcttc 198  Q
    ||||||||||||||||||||  ||| |||||||||||||||||    
T  22545505 tttctgtaaattgtgttagcgttgggaaagatttaatgtcttc 22545547  T

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