View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1612_low_3 (Length: 343)
Name: NF1612_low_3
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 39982685 - 39982365
Alignment:
| Q |
7 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
106 |
Q |
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| T |
39982685 |
catcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattt |
39982586 |
T |
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| Q |
107 |
aagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
206 |
Q |
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| T |
39982585 |
aagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcct |
39982486 |
T |
|
| Q |
207 |
aacatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
306 |
Q |
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| T |
39982485 |
aacatgacaccaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatttccct |
39982386 |
T |
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| Q |
307 |
caaatgtaggcctaagctttt |
327 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39982385 |
caaatgtaggcctaagctttt |
39982365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 44898767 - 44898551
Alignment:
| Q |
9 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
108 |
Q |
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| T |
44898767 |
tcatcaaaaggaacagcaatgcctagcttggtcttgtccctaagccaggttacggtgtttcggcaaacaggtaataagataatggccatattcaatttga |
44898668 |
T |
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| Q |
109 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
208 |
Q |
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|||| ||||| || ||||| ||||| || ||||| || |||||||||| |||||||| | |||| ||||| |||| ||||| |||||||||| || | |
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| T |
44898667 |
gtgtctcagctgcacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggcaaatagaccaca |
44898568 |
T |
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| Q |
209 |
catgacacaaatccaca |
225 |
Q |
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||| |||| |||||||| |
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| T |
44898567 |
cataacaccaatccaca |
44898551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 44885439 - 44885223
Alignment:
| Q |
9 |
tcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaatttaa |
108 |
Q |
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|||| ||||||||||| | ||||||||||||||| |||||||||| || | ||||||||||||||||| || ||||||| |||||||||||||| | |
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| T |
44885439 |
tcattaaaaggaacaacaatgcctagcttggtcttgctcctgagccatgtaacagtgtttcggcaaacaggtaacaagataagagccatgttcaatttga |
44885340 |
T |
|
| Q |
109 |
gtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaa |
208 |
Q |
| |
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|||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| ||||| |
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| T |
44885339 |
gtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaa |
44885240 |
T |
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| Q |
209 |
catgacacaaatccaca |
225 |
Q |
| |
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||| || | |||||||| |
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| T |
44885239 |
cataactccaatccaca |
44885223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 44914682 - 44914534
Alignment:
| Q |
8 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattta |
107 |
Q |
| |
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|||||||||||||||| | |||||| |||||||| ||||| ||||| |||||||||||||| |||||||| || |||||||| |||||||||||||| |
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| T |
44914682 |
atcatcaaaaggaacagcaatgcctagtttggtcttgttcctaagccatgtgatggtgtttcgacaaacaggtaacaagataatagccatgttcaatttg |
44914583 |
T |
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| Q |
108 |
agtgtttcagcagccccttttgccatgcacacacagtgccccatcactt |
156 |
Q |
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||||| ||||| || ||||| |||||||||||||| || ||||| |||| |
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| T |
44914582 |
agtgtctcagctgcacctttagccatgcacacacaatgacccattactt |
44914534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 46562141 - 46562263
Alignment:
| Q |
8 |
atcatcaaaaggaacaaaagcgcctagcttggtcttattcctgagccaagtgatggtgtttcggcaaacaggcaataagataatggccatgttcaattta |
107 |
Q |
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||||||||| ||||||| | | |||| |||||||| | |||||||||||||||||||||| |||||||||| ||| || | |||||||| || || |
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| T |
46562141 |
atcatcaaagggaacaacaactcctaatttggtcttgcttctgagccaagtgatggtgtttctacaaacaggcattaaaattaatgccatgttgaacttg |
46562240 |
T |
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| Q |
108 |
agtgtttcagcagccccttttgc |
130 |
Q |
| |
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|| || |||||||| || ||||| |
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| T |
46562241 |
agagtctcagcagcaccctttgc |
46562263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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