View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1612_low_7 (Length: 285)
Name: NF1612_low_7
Description: NF1612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1612_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 151 - 281
Target Start/End: Original strand, 40651920 - 40652050
Alignment:
| Q |
151 |
ggtgacgtgcagcagtgcgattgtagccattaaaatcggcttcaagttctcctctcctttcgtcccgccttttttcttccaaccatcctcacaatgcaat |
250 |
Q |
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| T |
40651920 |
ggtgacgtgcagcagtgcgattgtagccattaaaatcggcttcaagttctcctctcctttcgtcccgccttttttcttccaaccatcctcacaatgcaat |
40652019 |
T |
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| Q |
251 |
cttccctccttttctctctatctctctcctt |
281 |
Q |
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| T |
40652020 |
cttccctctttttctctctatctctctcctt |
40652050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 25222549 - 25222517
Alignment:
| Q |
3 |
ccactctatccttgcgtgcgctatcggtcatgg |
35 |
Q |
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| T |
25222549 |
ccactctatccttacgtgcgctatcggtcatgg |
25222517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 8351750 - 8351826
Alignment:
| Q |
2 |
gccactctatccttgcgtgcgctatcggtcatggcctcttttcctggtatgtgtttgtcagccatatcttcacaacatat |
81 |
Q |
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| T |
8351750 |
gccactctatccttgcgtgcgctatcggtcatggcctcttttcctggtatgtgtttgt---ccatatcttcacaacatat |
8351826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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