View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16130_high_3 (Length: 262)
Name: NF16130_high_3
Description: NF16130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16130_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 2515269 - 2515507
Alignment:
| Q |
9 |
gaaaaatcaaaccaatttaattgggttgaattgaattgtcatgttcattgagttatttgttttgtacttatactcctaattttatttaaaatgtcattga |
108 |
Q |
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| T |
2515269 |
gaaaaatcaaaccaatttaattgggttgaattgaatcgtcatgttcattgagttatttgttttgtacttatacccctaattttatttaaaatgtcattga |
2515368 |
T |
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| Q |
109 |
aacatgcaattacaatccacgttaaaatgcagaaagattgttgcaaaaggccatataaagagggattgtcattcaacacaaaaatcaaatgaaagcatca |
208 |
Q |
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| T |
2515369 |
aacatgcaattacaatccacgttaaaatgcagaaagattgttgcaaaaggctatataaagagggattgtcattcaacacaaaaatcaaatgaaagcatca |
2515468 |
T |
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| Q |
209 |
tcatttagttgcaagtaggggtgacaaaattgataaatt |
247 |
Q |
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| T |
2515469 |
tcatttagttgcaaataggggtgacaaaattgataaatt |
2515507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 2511805 - 2511862
Alignment:
| Q |
152 |
caaaaggccatataaagagggattgtcattcaacac--aaaaatcaaatgaaagcatc |
207 |
Q |
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|||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
2511805 |
caaaaggccatacaaagagggcttgttattcaacacaaaaaaatcaaatgaaagcatc |
2511862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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