View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16130_low_1 (Length: 388)
Name: NF16130_low_1
Description: NF16130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16130_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 18538943 - 18539318
Alignment:
| Q |
1 |
ctttctttaagttaatatgcatttcatcgatacccttggactgtatcacttatattatcaaagttaaatggacatgaagtaccatgctttcatgttgtat |
100 |
Q |
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| T |
18538943 |
ctttctttaagttaatatgcatttcatcgatacccttggactgtatcacttatattatcaaagttaaatggacatgaaataccatgctttcatgttgtat |
18539042 |
T |
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| Q |
101 |
gattttgtttaacattatctattaatgtcaattactagttatgtcatgttatataactcaattatatcgagcaaatcgtagacaatgaaagtgagaaaaa |
200 |
Q |
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| T |
18539043 |
gattttgtttaacattatctattaatgtcaattactagttatgccatgttatataactcaattatatcgagcgagttgtagacaatgaaagtgataaaaa |
18539142 |
T |
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| Q |
201 |
tagaagaaagggggttgaa--nnnnnnnnagggaaagaaagggggc------gtgtttgttatttttaaaaaatcttttctatcttaaaatagattagag |
292 |
Q |
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| T |
18539143 |
tagaagaaagggggttgaattttttttttagggaaagaaagggggctgaattgtgttggttatttttaaaaaatcttttctatcttaaaatagatcagag |
18539242 |
T |
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| Q |
293 |
gataggaagagnnnnnnnngtaacaaagatagagagaaaaaataaacacgtatatttattatggttcaccccacaact |
370 |
Q |
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| T |
18539243 |
gataggaaga-aaaaaaaagcaacaaagatagagag-aaaaataaaaacgtatatttattctggttcaccccacaact |
18539318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 18555954 - 18556026
Alignment:
| Q |
34 |
ccttggactgtatcacttatattatcaaagttaaatggacatgaagtaccatgctttcatgttgtatgatttt |
106 |
Q |
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| T |
18555954 |
ccttggattgtaccacttatattatcaaagctaaatggataaaaagtatcacgatttcatgttatattatttt |
18556026 |
T |
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