View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16130_low_2 (Length: 353)

Name: NF16130_low_2
Description: NF16130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16130_low_2
NF16130_low_2
[»] chr1 (17 HSPs)
chr1 (13-353)||(52819264-52819604)
chr1 (108-344)||(52819477-52819713)
chr1 (234-353)||(52819588-52819707)
chr1 (78-223)||(52819478-52819623)
chr1 (30-139)||(52819598-52819707)
chr1 (15-217)||(52819208-52819398)
chr1 (285-334)||(52819211-52819260)
chr1 (156-218)||(11881466-11881528)
chr1 (279-349)||(52819760-52819830)
chr1 (279-338)||(11890967-11891026)
chr1 (156-253)||(52819736-52819833)
chr1 (72-140)||(52819765-52819833)
chr1 (279-334)||(11881469-11881524)
chr1 (279-334)||(11890835-11890890)
chr1 (279-334)||(11891099-11891154)
chr1 (156-218)||(11891096-11891158)
chr1 (156-217)||(11890832-11890893)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 52819604 - 52819264
Alignment:
Q  13 catcaccaacttacgtgtacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctccaccatcaccagtttatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52819604 catcaccaacttacgtgtacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctccaccatcaccagtttacta 52819505  T
Q  113 ctacaagtctccacctccaccttcacctgtgtacaaacccccgtactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819504 ctacaagtctccacctccaccttcacctgtgtacaaacccccgtactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacct 52819405  T
Q  213 ccaccgtcaccaacatatgtgtacaagtcaccacccccaccatcacctatatacaaaccaccctattactacaagtcacctcctcctccaacaccagttt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819404 ccaccgtcaccaacatatgtgtacaagtcaccacccccaccatcacctgtatacaaaccaccctattactacaagtcacctcctcctccaacaccagttt 52819305  T
Q  313 acaagtacaattcaccacctccgccatcacctacttacgtg 353  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  52819304 acaagtacaattcaccacctccgccatcacctgcttacgtg 52819264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 108 - 344
Target Start/End: Complemental strand, 52819713 - 52819477
Alignment:
Q  108 tattactacaagtctccacctccaccttcacctgtgtacaaacccccgtactactacaattcaccacctcctccaacaccagtttacaaatacaattcac 207  Q
    ||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||    
T  52819713 tattattacaagtcaccacccccaccatcacctgtttacaaacccccatactactacaagtcacctcctcctccaacaccaatttacaagtacaattcac 52819614  T
Q  208 cacctccaccgtcaccaacatatgtgtacaagtcaccacccccaccatcacctatatacaaaccaccctattactacaagtcacctcctcctccaacacc 307  Q
    |||||||||| |||||||| || ||||||||||| |||||||||||||||||| | || ||||| || || || ||||||||||||||||| ||| ||||    
T  52819613 cacctccaccatcaccaacttacgtgtacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctccaccatcacc 52819514  T
Q  308 agtttacaagtacaattcaccacctccgccatcacct 344  Q
    ||||||| | ||||| || |||||||| || ||||||    
T  52819513 agtttactactacaagtctccacctccaccttcacct 52819477  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 234 - 353
Target Start/End: Complemental strand, 52819707 - 52819588
Alignment:
Q  234 tacaagtcaccacccccaccatcacctatatacaaaccaccctattactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctc 333  Q
    ||||||||||||||||||||||||||| | |||||||| || || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52819707 tacaagtcaccacccccaccatcacctgtttacaaacccccatactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctc 52819608  T
Q  334 cgccatcacctacttacgtg 353  Q
    | |||||||| |||||||||    
T  52819607 caccatcaccaacttacgtg 52819588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 52819623 - 52819478
Alignment:
Q  78 tacaagtcacctcctccaccatcaccagtttattactacaagtctccacctccaccttcacctgtgtacaaacccccgtactactacaattcaccacctc 177  Q
    ||||| ||||| |||||||||||||||  |||    |||||||||||||| ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||    
T  52819623 tacaattcaccacctccaccatcaccaacttacgtgtacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctc 52819524  T
Q  178 ctccaacaccagtttacaaatacaattcaccacctccaccgtcacc 223  Q
    | ||| ||||||||||| | ||||| || ||||||||||| |||||    
T  52819523 caccatcaccagtttactactacaagtctccacctccaccttcacc 52819478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 52819707 - 52819598
Alignment:
Q  30 tacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctccaccatcaccagtttattactacaagtctccacctc 129  Q
    |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||| ||||| ||||  | ||||| || |||||||    
T  52819707 tacaagtcaccacccccaccatcacctgtttacaaacccccatactactacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctc 52819608  T
Q  130 caccttcacc 139  Q
    |||| |||||    
T  52819607 caccatcacc 52819598  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 52819398 - 52819208
Alignment:
Q  15 tcaccaacttacgtgtacaagtctccacccccaccatcacctgtgtataaacccccatactattacaagtcacctcctccaccatcaccagtttattact 114  Q
    |||||||| || ||||||||||| |||||||||||||||||||| || ||||| || || || ||||||||||||||||| ||| ||||||||||  | |    
T  52819398 tcaccaacatatgtgtacaagtcaccacccccaccatcacctgtatacaaaccaccctattactacaagtcacctcctcctccaacaccagtttacaagt 52819299  T
Q  115 acaagtctccacctccaccttcacctgtgtacaaacccccgtactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctcc 214  Q
    |||| || |||||||| || |||||||            | |||   || || || || ||||||||||||||||||||||| ||||| |||||||||||    
T  52819298 acaattcaccacctccgccatcacctg------------cttacgtgtataagtctcctcctcctccaacaccagtttacaagtacaagtcaccacctcc 52819211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 52819260 - 52819211
Alignment:
Q  285 aagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 334  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  52819260 aagtctcctcctcctccaacaccagtttacaagtacaagtcaccacctcc 52819211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 11881466 - 11881528
Alignment:
Q  156 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccg 218  Q
    ||||||||||| ||||| || |||||  ||||||||||||||||||| |||||||||||||||    
T  11881466 tactactacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctccaccg 11881528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Complemental strand, 52819830 - 52819760
Alignment:
Q  279 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctccgccatcacctactta 349  Q
    |||||||||||||||||||||||  |||| ||||| |  ||||| ||||||||||| ||||||||||||||    
T  52819830 tactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccaccatcacctactta 52819760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 11890967 - 11891026
Alignment:
Q  279 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctccgcca 338  Q
    |||||||| |||||||| |||||  ||||||||||||||||||| || ||||||||||||    
T  11890967 tactacaaatcacctccacctcccgcaccagtttacaagtacaactccccacctccgcca 11891026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 253
Target Start/End: Complemental strand, 52819833 - 52819736
Alignment:
Q  156 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccgtcaccaacatatgtgtacaagtcaccacccccacc 253  Q
    ||||||||||| ||||| ||||||||  |||| ||||| | |||||| |||||||||||||| ||||| || |||  |||||  |||||||| |||||    
T  52819833 tactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccaccatcacctacttataagtacacatcaccacctccacc 52819736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Complemental strand, 52819833 - 52819765
Alignment:
Q  72 tactattacaagtcacctcctccaccatcaccagtttattactacaagtctccacctccaccttcacct 140  Q
    ||||| ||||||||||||||||| || ||||| ||||||   |||||||| ||||||||||| ||||||    
T  52819833 tactactacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccaccatcacct 52819765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 11881469 - 11881524
Alignment:
Q  279 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 334  Q
    |||||||| |||||||| |||||  ||||||||||||| ||||| |||||||||||    
T  11881469 tactacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctcc 11881524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 11890835 - 11890890
Alignment:
Q  279 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 334  Q
    |||||||| |||||||| |||||  |||||||||||||||| || |||||||||||    
T  11890835 tactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctcc 11890890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 11891099 - 11891154
Alignment:
Q  279 tactacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 334  Q
    |||||||| |||||||| |||||  |||| |||||||||||||| |||||||||||    
T  11891099 tactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctcc 11891154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 11891096 - 11891158
Alignment:
Q  156 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccaccg 218  Q
    ||||||||||| ||||| || |||||  |||| |||||||| ||||| |||||||||||||||    
T  11891096 tactactacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccg 11891158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 11890832 - 11890893
Alignment:
Q  156 tactactacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccacc 217  Q
    ||||||||||| ||||| || |||||  ||||||||||||| || || ||||||||||||||    
T  11890832 tactactacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacc 11890893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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