View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16130_low_6 (Length: 243)

Name: NF16130_low_6
Description: NF16130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16130_low_6
NF16130_low_6
[»] chr1 (112 HSPs)
chr1 (4-226)||(52819038-52819260)
chr1 (1-139)||(11891102-11891240)
chr1 (1-139)||(11881868-11882006)
chr1 (71-200)||(52818872-52819001)
chr1 (1-143)||(11904725-11904867)
chr1 (76-182)||(11904896-11905002)
chr1 (83-182)||(11882298-11882397)
chr1 (83-182)||(11891532-11891631)
chr1 (76-200)||(52818920-52819044)
chr1 (91-182)||(11882402-11882493)
chr1 (91-182)||(11891636-11891727)
chr1 (73-166)||(11905181-11905274)
chr1 (76-200)||(11882099-11882223)
chr1 (76-200)||(11891333-11891457)
chr1 (71-183)||(11905035-11905147)
chr1 (71-200)||(11905083-11905212)
chr1 (1-101)||(11881472-11881572)
chr1 (1-101)||(11890838-11890938)
chr1 (1-53)||(52819283-52819335)
chr1 (73-176)||(11904989-11905092)
chr1 (1-56)||(52819604-52819659)
chr1 (1-101)||(11881604-11881704)
chr1 (1-101)||(11890970-11891070)
chr1 (71-183)||(11904939-11905051)
chr1 (73-200)||(11879574-11879701)
chr1 (72-179)||(11879786-11879893)
chr1 (1-104)||(11904065-11904168)
chr1 (1-107)||(52819685-52819791)
chr1 (71-224)||(11882142-11882295)
chr1 (71-224)||(11891376-11891529)
chr1 (72-201)||(11902478-11902607)
chr1 (23-104)||(11904219-11904300)
chr1 (23-104)||(11904351-11904432)
chr1 (23-104)||(11904483-11904564)
chr1 (1-101)||(11881736-11881836)
chr1 (100-200)||(11882363-11882463)
chr1 (100-200)||(11891597-11891697)
chr1 (71-182)||(11905419-11905530)
chr1 (1-56)||(52819400-52819455)
chr1 (73-179)||(11889531-11889637)
chr1 (88-182)||(11902185-11902279)
chr1 (23-101)||(11904615-11904693)
chr1 (97-182)||(11882552-11882637)
chr1 (73-154)||(11889627-11889708)
chr1 (97-182)||(11891786-11891871)
chr1 (73-182)||(11902527-11902636)
chr1 (73-182)||(52821053-52821162)
chr1 (73-201)||(11879979-11880107)
chr1 (75-179)||(11889773-11889877)
chr1 (91-179)||(11905295-11905383)
chr1 (91-167)||(11905487-11905563)
chr1 (79-167)||(52818569-52818657)
chr1 (1-57)||(52819483-52819539)
chr1 (100-179)||(11882459-11882538)
chr1 (100-179)||(11891693-11891772)
chr1 (127-182)||(11902677-11902732)
chr1 (120-183)||(52818985-52819048)
chr1 (76-182)||(11882579-11882685)
chr1 (109-167)||(11882708-11882766)
chr1 (73-179)||(11888187-11888293)
chr1 (73-179)||(11888235-11888341)
chr1 (73-179)||(11888283-11888389)
chr1 (73-179)||(11888331-11888437)
chr1 (73-179)||(11888379-11888485)
chr1 (73-179)||(11888427-11888533)
chr1 (73-179)||(11888475-11888581)
chr1 (73-179)||(11888523-11888629)
chr1 (73-179)||(11888571-11888677)
chr1 (73-179)||(11888619-11888725)
chr1 (73-179)||(11888667-11888773)
chr1 (73-179)||(11888715-11888821)
chr1 (73-179)||(11888763-11888869)
chr1 (73-179)||(11888811-11888917)
chr1 (73-179)||(11888859-11888965)
chr1 (73-179)||(11888907-11889013)
chr1 (73-179)||(11888955-11889061)
chr1 (73-179)||(11889003-11889109)
chr1 (73-179)||(11889051-11889157)
chr1 (73-179)||(11889099-11889205)
chr1 (73-179)||(11889147-11889253)
chr1 (73-179)||(11889195-11889301)
chr1 (73-179)||(11889243-11889349)
chr1 (73-179)||(11889291-11889397)
chr1 (73-179)||(11889339-11889445)
chr1 (73-179)||(11889387-11889493)
chr1 (73-179)||(11889435-11889541)
chr1 (76-182)||(11891813-11891919)
chr1 (109-167)||(11891894-11891952)
chr1 (73-182)||(11889483-11889592)
chr1 (79-176)||(11902320-11902417)
chr1 (71-200)||(11905131-11905260)
chr1 (127-179)||(11880177-11880229)
chr1 (127-179)||(11880273-11880325)
chr1 (127-179)||(11902773-11902825)
chr1 (37-101)||(11903969-11904033)
chr1 (73-164)||(11879670-11879761)
chr1 (109-200)||(11879967-11880058)
chr1 (97-188)||(52818692-52818783)
chr1 (1-56)||(52819772-52819827)
chr1 (71-154)||(52821225-52821308)
chr1 (91-161)||(11882498-11882568)
chr1 (91-161)||(11891732-11891802)
chr1 (100-182)||(11905256-11905338)
chr1 (78-143)||(11882005-11882070)
chr1 (78-143)||(11891239-11891304)
chr1 (97-182)||(11905397-11905482)
chr1 (127-179)||(11879937-11879989)
chr1 (120-200)||(11882095-11882175)
chr1 (120-200)||(11891329-11891409)
chr1 (88-200)||(11902137-11902249)
chr1 (112-200)||(11902305-11902393)
chr1 (82-182)||(52818746-52818846)
[»] scaffold1918 (1 HSPs)
scaffold1918 (88-182)||(58-152)
[»] chr4 (4 HSPs)
chr4 (71-176)||(24420898-24421003)
chr4 (88-176)||(24421090-24421178)
chr4 (88-176)||(24470737-24470825)
chr4 (88-129)||(24470976-24471017)
[»] chr6 (6 HSPs)
chr6 (23-60)||(12192333-12192370)
chr6 (16-56)||(12179191-12179231)
chr6 (14-56)||(12163303-12163345)
chr6 (14-56)||(12163363-12163405)
chr6 (23-56)||(12179165-12179198)
chr6 (23-56)||(12192384-12192417)
[»] scaffold0879 (2 HSPs)
scaffold0879 (88-176)||(4596-4684)
scaffold0879 (71-158)||(4771-4858)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 112)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 52819260 - 52819038
Alignment:
Q  4 aagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctccac 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819260 aagtctcctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctccac 52819161  T
Q  104 catccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacctaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819160 catccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacctaa 52819061  T
Q  204 agaattaccaaaccctccatact 226  Q
    |||||||||||||||||||||||    
T  52819060 agaattaccaaaccctccatact 52819038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 11891102 - 11891240
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  11891102 tacaaatcacctccacctcccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccatactactacaagtcaccacccc 11891201  T
Q  101 caccatccccatcacctccccctccatactattacaaat 139  Q
    ||||||| ||||||||||| || |||||||||| |||||    
T  11891202 caccatctccatcacctcctccaccatactatttcaaat 11891240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 11881868 - 11882006
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| || ||  |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |    
T  11881868 tacaaatcacctccaccacccgcaccggtttacaagtacaactcaccacctccaccggtccattattattctccaccatactactacaagtcaccacccc 11881967  T
Q  101 caccatccccatcacctccccctccatactattacaaat 139  Q
    ||||||| ||||||||||| || |||||||||| |||||    
T  11881968 caccatctccatcacctcctccaccatactatttcaaat 11882006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 52819001 - 52818872
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||    
T  52819001 ctccaccatactattataagtcaccacctccaccatcaccatcccctccccctccatactattataaatctcctccaccaccctcaccatccccacctcc 52818902  T
Q  171 accatactattatcattctcctcccccacc 200  Q
    ||| |||||||| || || ||||| |||||    
T  52818901 accgtactattaccaatcccctccaccacc 52818872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 11904725 - 11904867
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  |||| ||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |    
T  11904725 tacaaatcacctccacctcctgcaccggtttataagtacaactcacctcctccaccagtccattattattctcctccatactactataagtcaccacccc 11904824  T
Q  101 caccatccccatcacctccccctccatactattacaaatctcc 143  Q
    ||||||| ||||| ||||| || || || ||||||||||||||    
T  11904825 caccatcaccatcccctcctccaccttattattacaaatctcc 11904867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 11904896 - 11905002
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||||| || ||||||||||| ||||| |||||||    
T  11904896 ccatactactataagtcaccacccccaccatccccatcacctcctccaccatactattacaagtccccccctccaccatcaccatctccaccaccaccat 11904995  T
Q  176 actatta 182  Q
    |||||||    
T  11904996 actatta 11905002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 11882298 - 11882397
Alignment:
Q  83 actataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||    
T  11882298 actataagtcaccacccccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactatta 11882397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 11891532 - 11891631
Alignment:
Q  83 actataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||    
T  11891532 actataagtcaccacccccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactatta 11891631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 200
Target Start/End: Complemental strand, 52819044 - 52818920
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| || || || || || |||||||||||||| || || ||||    
T  52819044 ccatactactataagtcaccaccaccaccatcaccatcccctcctccaccatactattataagtcaccacctccaccatcaccatcccctccccctccat 52818945  T
Q  176 actattatcattctcctcccccacc 200  Q
    |||||||| | |||||||| |||||    
T  52818944 actattataaatctcctccaccacc 52818920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 11882402 - 11882493
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||    
T  11882402 tcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactatta 11882493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 11891636 - 11891727
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| || || ||||||||    
T  11891636 tcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactatta 11891727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 11905181 - 11905274
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccac 166  Q
    ||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||    
T  11905181 ccaccttactattataagtcaccacccccaccatcaccatcccctccccctccatattattacaaatctcctccaccaccatccccatcaccac 11905274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 11882099 - 11882223
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| || || ||||||||||| || || ||||| |    
T  11882099 ccatactactataagtcaccacccccaccatcaccatcacctcctccaccatactattataagtctccacctccaccatcaccatctcccccaccacctt 11882198  T
Q  176 actattatcattctcctcccccacc 200  Q
    | |||||| | || || ||||||||    
T  11882199 attattataagtcaccacccccacc 11882223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 11891333 - 11891457
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||| || ||||| || || ||||||||||| || || ||||| |    
T  11891333 ccatactactataagtcaccacccccaccatcaccatcacctcctccaccatactattataagtctccacctccaccatcaccatctcccccaccacctt 11891432  T
Q  176 actattatcattctcctcccccacc 200  Q
    | |||||| | || || ||||||||    
T  11891433 attattataagtcaccacccccacc 11891457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 11905035 - 11905147
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| || || || || ||  | || ||||| |||||||| |||||    
T  11905035 ctccaccatactattataagtcaccacctccaccatccccatcccctcctccaccatattactataagtcaccagctccaccatccccatcccctcctcc 11905134  T
Q  171 accatactattat 183  Q
    |||||||||||||    
T  11905135 accatactattat 11905147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 11905083 - 11905212
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||| || ||||||||||| || || || || || || |||||| | ||||| ||    
T  11905083 ctccaccatattactataagtcaccagctccaccatccccatcccctcctccaccatactattataagtccccacctccaccgtcaccagctccaccacc 11905182  T
Q  171 accatactattatcattctcctcccccacc 200  Q
    ||| ||||||||| | || || ||||||||    
T  11905183 accttactattataagtcaccacccccacc 11905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11881472 - 11881572
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  ||||||||||||| ||||| |||||||||||||| |||||||||||||| || ||||||  ||| |||||||| ||||    
T  11881472 tacaaatcacctccacctccctcaccagtttacaaatacaactcaccacctccaccggtccattattattcacctccatacacctacaagtcacctcctc 11881571  T
Q  101 c 101  Q
    |    
T  11881572 c 11881572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11890838 - 11890938
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  |||||||||||||||| || |||||||||||||| ||||||||||| || || ||||| ||||| |||||||| ||||    
T  11890838 tacaaatcacctccacctccctcaccagtttacaagtataactcaccacctccacccgtccattattactcacctccatattactacaagtcacctcctc 11890937  T
Q  101 c 101  Q
    |    
T  11890938 c 11890938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52819335 - 52819283
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctcc 53  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52819335 tacaagtcacctcctcctccaacaccagtttacaagtacaattcaccacctcc 52819283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 11904989 - 11905092
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    ||||||||||| || |||||||||||||||||||| ||||| ||||| || ||||||||||| || || || || || ||||| |||||||| |||||||    
T  11904989 ccaccatactattacaagtcaccacctccaccatctccatctcctcctccaccatactattataagtcaccacctccaccatccccatcccctcctccac 11905088  T
Q  173 cata 176  Q
    ||||    
T  11905089 cata 11905092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52819659 - 52819604
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  52819659 tacaagtcacctcctcctccaacaccaatttacaagtacaattcaccacctccacc 52819604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11881604 - 11881704
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| || ||  |||| |||||||||||||| ||||| |||||||| |||||||||||||| ||||||||   |||||||||||| ||||    
T  11881604 tacaaatcacctccaccacccgcaccggtttacaagtacaactcaccccctccaccggtccattattattcaccaccatatacctataagtcacctcctc 11881703  T
Q  101 c 101  Q
    |    
T  11881704 c 11881704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11890970 - 11891070
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  ||||||||||||||||||| || |||||||| || |||||||| ||||| || ||||||  |||||||||||| ||||    
T  11890970 tacaaatcacctccacctcccgcaccagtttacaagtacaactccccacctccgccagtccattactattcacctccatacacctataagtcacctcctc 11891069  T
Q  101 c 101  Q
    |    
T  11891070 c 11891070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 11904939 - 11905051
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| || ||||| || ||||||||||| ||||| || || || |||||||||||||| || || || || ||||| ||||| || |||||    
T  11904939 ctccaccatactattacaagtccccccctccaccatcaccatctccaccaccaccatactattacaagtcaccacctccaccatctccatctcctcctcc 11905038  T
Q  171 accatactattat 183  Q
    |||||||||||||    
T  11905039 accatactattat 11905051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 11879574 - 11879701
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| |||   || || ||||| || || |||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||||    
T  11879574 ccaccatactactacaagagtcctccaccaccttctccttcacctccacctccttactactacaaatctcctccaccaccctcaccttccccaccaccac 11879673  T
Q  173 catactattatcattctcctcccccacc 200  Q
    ||||||||||  | |||||||| |||||    
T  11879674 catactattacaagtctcctccaccacc 11879701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 11879786 - 11879893
Alignment:
Q  72 tccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcca 171  Q
    |||||||||||| || ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||||||||||||||| || ||||| || || || |||    
T  11879786 tccaccatactattacaagtccccaccaccaccttcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccacca 11879885  T
Q  172 ccatacta 179  Q
    ||||||||    
T  11879886 ccatacta 11879893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11904065 - 11904168
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| || ||  |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||   ||| |||||||| ||||    
T  11904065 tacaaatcacctccaccacccgcaccggtttacaagtacaactccccacctccaccagtccattattattcaccaccatatacctacaagtcacctcctc 11904164  T
Q  101 cacc 104  Q
    ||||    
T  11904165 cacc 11904168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 52819791 - 52819685
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||||||||| ||||| ||| ||||   ||| |||||||  ||||||||||||||||||||| | |||||||| ||||| || || ||||||||||| |    
T  52819791 tacaagtcaccacctccaccatcacctacttataagtacacatcaccacctccacctgtccatcaatattctcctccatattattacaagtcaccacccc 52819692  T
Q  101 caccatc 107  Q
    |||||||    
T  52819691 caccatc 52819685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 11882142 - 11882295
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| |||||||| |||||||||||||| ||||| || || || || || ||||| || || || || || ||||| || ||||| |||||    
T  11882142 ctccaccatactattataagtctccacctccaccatcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctcc 11882241  T
Q  171 accatactattatcattctcctcccccacctaaagaattaccaaaccctccata 224  Q
    ||||||||| ||  | ||||| || |||||||||||| || || | ||||||||    
T  11882242 accatactactacaagtctccacctccacctaaagaaatatcacatcctccata 11882295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 11891376 - 11891529
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| |||||||| |||||||||||||| ||||| || || || || || ||||| || || || || || ||||| || ||||| |||||    
T  11891376 ctccaccatactattataagtctccacctccaccatcaccatctcccccaccaccttattattataagtcaccacccccaccatccccgtcccctcctcc 11891475  T
Q  171 accatactattatcattctcctcccccacctaaagaattaccaaaccctccata 224  Q
    ||||||||| ||  | ||||| || |||||||||||| || || | ||||||||    
T  11891476 accatactactacaagtctccacctccacctaaagaaatatcacatcctccata 11891529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 11902478 - 11902607
Alignment:
Q  72 tccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcca 171  Q
    |||||||||||| || ||||| ||||| || || || ||||| ||||| || |||||||| || |||||||||||||| || ||||| || ||||| |||    
T  11902478 tccaccatactattacaagtccccaccacccccttcaccatctcctccaccaccatactactataaatctcccccaccaccctcaccctctccaccccca 11902577  T
Q  172 ccatactattatcattctcctcccccacct 201  Q
    || ||||||||  | |||||||| ||||||    
T  11902578 ccttactattacaagtctcctccaccacct 11902607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 11904219 - 11904300
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctccacc 104  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||   ||| |||||||| ||||||||    
T  11904219 caccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacc 11904300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 11904351 - 11904432
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctccacc 104  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||   ||| |||||||| ||||||||    
T  11904351 caccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacc 11904432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 11904483 - 11904564
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctccacc 104  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||   ||| |||||||| ||||||||    
T  11904483 caccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctccacc 11904564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11881736 - 11881836
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctc 100  Q
    ||||| |||||||| |||||  |||| |||||||||||||| || ||||||||||| |||||||||||||| || |||||   ||| |||||||| ||||    
T  11881736 tacaaatcacctccacctcccgcaccggtttacaagtacaactccccacctccaccggtccattattattcacctccatatacctacaagtcacctcctc 11881835  T
Q  101 c 101  Q
    |    
T  11881836 c 11881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 11882363 - 11882463
Alignment:
Q  100 ccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccac 199  Q
    |||||||| |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || || || |||||||||||  | |||||||| ||||    
T  11882363 ccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccac 11882462  T
Q  200 c 200  Q
    |    
T  11882463 c 11882463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 11891597 - 11891697
Alignment:
Q  100 ccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccac 199  Q
    |||||||| |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || || || |||||||||||  | |||||||| ||||    
T  11891597 ccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccac 11891696  T
Q  200 c 200  Q
    |    
T  11891697 c 11891697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 182
Target Start/End: Original strand, 11905419 - 11905530
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    |||| ||||| ||||| || || ||||| |||||||| |||||||| |||||||| |||||||||||||| || ||||| || |||||||| || || ||    
T  11905419 ctcccccatattactacaaatctccaccaccaccatcaccatcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacc 11905518  T
Q  171 accatactatta 182  Q
     || ||||||||    
T  11905519 tccttactatta 11905530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52819455 - 52819400
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||    
T  52819455 tacaattcaccacctcctccaacaccagtttacaaatacaattcaccacctccacc 52819400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889531 - 11889637
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || |||||||| || |||||||||||||| || || || || |||||||| || || ||||    
T  11889531 ccaccatactactacaaatccccacctccaccatcgccttctcctcccccaccttactattacaaatccccaccgccaccttcaccatctcccccaccac 11889630  T
Q  173 catacta 179  Q
    | |||||    
T  11889631 cctacta 11889637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 11902185 - 11902279
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||||||||| ||||| || || || || ||||| |||||||||||||| ||||| ||||| || || || |||||||| ||||||||||||||    
T  11902185 aagtcaccaccaccaccctcgccttccccgcccccaccatactattacaagtctcctccaccaccctcgccttccccaccgccaccatactatta 11902279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 11904615 - 11904693
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 101  Q
    |||| |||||||||||||| || ||||||||||| |||||||||||||| ||||||||   ||| |||||||| |||||    
T  11904615 caccggtttacaagtacaactccccacctccaccggtccattattattcaccaccatatacctacaagtcacctcctcc 11904693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 11882552 - 11882637
Alignment:
Q  97 cctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||||||||| ||||| |||||  | ||||| || ||||||||||| ||||| ||||||||||||||||| || || ||||||||    
T  11882552 cctccaccatctccatctcctccatccccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactatta 11882637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 11889627 - 11889708
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccat 154  Q
    ||||| ||||||||||| ||||| || ||||| || ||||| ||||| || |||||||| |||||||| |||||||||||||    
T  11889627 ccaccctactactataaatcacccccaccaccttcaccatctcctccaccaccatactactacaaatcacccccaccgccat 11889708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 11891786 - 11891871
Alignment:
Q  97 cctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||||||||| ||||| |||||  | ||||| || ||||||||||| ||||| ||||||||||||||||| || || ||||||||    
T  11891786 cctccaccatctccatctcctccatccccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactatta 11891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 11902527 - 11902636
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    ||||||||||||||||| || || || ||||| || || || || ||||| || ||||||||||| ||||| ||||| || |||||||| || || ||||    
T  11902527 ccaccatactactataaatctcccccaccaccctcaccctctccacccccaccttactattacaagtctcctccaccaccttcaccatctcctccaccac 11902626  T
Q  173 catactatta 182  Q
    ||||||||||    
T  11902627 catactatta 11902636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 52821162 - 52821053
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    ||||| |||||||| ||||| || || ||||| || || |||||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||| ||||| |    
T  52821162 ccaccttactactacaagtctcctccaccaccctctccctcacctccacctccttactactacaagtctcccccaccaccctcaccctcccctcctcctc 52821063  T
Q  173 catactatta 182  Q
    |||| |||||    
T  52821062 catattatta 52821053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 11879979 - 11880107
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || || || || || || || || ||||| || |||||||| || |||||||||||||| || ||||| || ||||| ||||    
T  11879979 ccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactataaatctcccccaccaccgtcaccctctccaccaccac 11880078  T
Q  173 catactattatcattctcctcccccacct 201  Q
    | ||||||||  | |||||||||||||||    
T  11880079 cttactattacaagtctcctcccccacct 11880107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 11889773 - 11889877
Alignment:
Q  75 accatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccacca 174  Q
    ||||||||| || ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| || || ||||| || ||||| || ||||| ||||||    
T  11889773 accatactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattacaagtccccaccaccaccttcaccgtctccacccccacca 11889872  T
Q  175 tacta 179  Q
    |||||    
T  11889873 tacta 11889877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 11905295 - 11905383
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    ||||| || |||||||| |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || || || ||||||||    
T  11905295 tcacctccaccaccatcgccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcgcctccacctccatacta 11905383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 11905487 - 11905563
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 167  Q
    ||||| || ||||| || |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  11905487 tcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccacc 11905563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 52818657 - 52818569
Alignment:
Q  79 tactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 167  Q
    |||||||| || ||||| || ||||||||||| |||||||| ||||| ||||||||||| || || ||||| ||||| ||||| |||||    
T  52818657 tactactacaaatcacctccaccaccatccccgtcacctccacctccttactattacaagtcacctccacctccatctccatctccacc 52818569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52819539 - 52819483
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacct 57  Q
    ||||||||||||||||| ||| ||||||||||| | |||||||| ||||||||||||    
T  52819539 tacaagtcacctcctccaccatcaccagtttactactacaagtctccacctccacct 52819483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 11882459 - 11882538
Alignment:
Q  100 ccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    |||||||| |||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| ||||| || ||||||||    
T  11882459 ccaccatcaccatcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatacta 11882538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 11891693 - 11891772
Alignment:
Q  100 ccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    |||||||| |||||||| || ||||| |||||||||||||| || ||||| ||||| ||||| ||||| || ||||||||    
T  11891693 ccaccatcaccatcaccaccacctccttactattacaaatcacctccaccaccatccccatcaccaccacctccatacta 11891772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 11902677 - 11902732
Alignment:
Q  127 tactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||||||||||||||||||||| || |||||||| || || ||||||||||||||    
T  11902677 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactatta 11902732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 52819048 - 52818985
Alignment:
Q  120 ccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattat 183  Q
    |||||||||||| || || || || ||||| |||||||||||||| ||||||||||||||||||    
T  52819048 ccctccatactactataagtcaccaccaccaccatcaccatcccctcctccaccatactattat 52818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 11882579 - 11882685
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||| ||||| || || ||||| |||||||| ||||| || |||||||| |||||||||||||| || ||||| || |||||||| || || || || |    
T  11882579 ccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctt 11882678  T
Q  176 actatta 182  Q
    |||||||    
T  11882679 actatta 11882685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 11882708 - 11882766
Alignment:
Q  109 ccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 167  Q
    |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  11882708 ccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccacc 11882766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888187 - 11888293
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888187 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888286  T
Q  173 catacta 179  Q
    |||||||    
T  11888287 catacta 11888293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888235 - 11888341
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888235 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888334  T
Q  173 catacta 179  Q
    |||||||    
T  11888335 catacta 11888341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888283 - 11888389
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888283 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888382  T
Q  173 catacta 179  Q
    |||||||    
T  11888383 catacta 11888389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888331 - 11888437
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888331 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888430  T
Q  173 catacta 179  Q
    |||||||    
T  11888431 catacta 11888437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888379 - 11888485
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888379 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888478  T
Q  173 catacta 179  Q
    |||||||    
T  11888479 catacta 11888485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888427 - 11888533
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888427 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888526  T
Q  173 catacta 179  Q
    |||||||    
T  11888527 catacta 11888533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888475 - 11888581
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888475 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888574  T
Q  173 catacta 179  Q
    |||||||    
T  11888575 catacta 11888581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888523 - 11888629
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888523 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888622  T
Q  173 catacta 179  Q
    |||||||    
T  11888623 catacta 11888629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #68
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888571 - 11888677
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888571 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888670  T
Q  173 catacta 179  Q
    |||||||    
T  11888671 catacta 11888677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #69
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888619 - 11888725
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888619 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888718  T
Q  173 catacta 179  Q
    |||||||    
T  11888719 catacta 11888725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #70
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888667 - 11888773
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888667 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888766  T
Q  173 catacta 179  Q
    |||||||    
T  11888767 catacta 11888773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #71
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888715 - 11888821
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888715 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888814  T
Q  173 catacta 179  Q
    |||||||    
T  11888815 catacta 11888821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #72
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888763 - 11888869
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888763 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888862  T
Q  173 catacta 179  Q
    |||||||    
T  11888863 catacta 11888869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #73
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888811 - 11888917
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888811 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888910  T
Q  173 catacta 179  Q
    |||||||    
T  11888911 catacta 11888917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #74
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888859 - 11888965
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888859 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11888958  T
Q  173 catacta 179  Q
    |||||||    
T  11888959 catacta 11888965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #75
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888907 - 11889013
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888907 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889006  T
Q  173 catacta 179  Q
    |||||||    
T  11889007 catacta 11889013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #76
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11888955 - 11889061
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11888955 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889054  T
Q  173 catacta 179  Q
    |||||||    
T  11889055 catacta 11889061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #77
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889003 - 11889109
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889003 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889102  T
Q  173 catacta 179  Q
    |||||||    
T  11889103 catacta 11889109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #78
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889051 - 11889157
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889051 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889150  T
Q  173 catacta 179  Q
    |||||||    
T  11889151 catacta 11889157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #79
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889099 - 11889205
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889099 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889198  T
Q  173 catacta 179  Q
    |||||||    
T  11889199 catacta 11889205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #80
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889147 - 11889253
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889147 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889246  T
Q  173 catacta 179  Q
    |||||||    
T  11889247 catacta 11889253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #81
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889195 - 11889301
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889195 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889294  T
Q  173 catacta 179  Q
    |||||||    
T  11889295 catacta 11889301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #82
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889243 - 11889349
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889243 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889342  T
Q  173 catacta 179  Q
    |||||||    
T  11889343 catacta 11889349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #83
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889291 - 11889397
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889291 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889390  T
Q  173 catacta 179  Q
    |||||||    
T  11889391 catacta 11889397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #84
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889339 - 11889445
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889339 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889438  T
Q  173 catacta 179  Q
    |||||||    
T  11889439 catacta 11889445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #85
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889387 - 11889493
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889387 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889486  T
Q  173 catacta 179  Q
    |||||||    
T  11889487 catacta 11889493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #86
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 11889435 - 11889541
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889435 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctccaccac 11889534  T
Q  173 catacta 179  Q
    |||||||    
T  11889535 catacta 11889541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #87
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 11891813 - 11891919
Alignment:
Q  76 ccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccat 175  Q
    ||||| ||||| || || ||||| |||||||| ||||| || |||||||| |||||||||||||| || ||||| || |||||||| || || || || |    
T  11891813 ccatattactacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctt 11891912  T
Q  176 actatta 182  Q
    |||||||    
T  11891913 actatta 11891919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #88
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 11891894 - 11891952
Alignment:
Q  109 ccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 167  Q
    |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  11891894 ccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccacc 11891952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #89
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 11889483 - 11889592
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccac 172  Q
    |||||||||||||| || || |||||||||||||| || || ||||| || |||||||| |||||||| || || || ||||| || || || || ||||    
T  11889483 ccaccatactactacaaatccccacctccaccatcgccttctcctccaccaccatactactacaaatccccacctccaccatcgccttctcctcccccac 11889582  T
Q  173 catactatta 182  Q
    | ||||||||    
T  11889583 cttactatta 11889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #90
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 11902320 - 11902417
Alignment:
Q  79 tactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccata 176  Q
    ||||||||||| || || || ||||| || || || |||||||| |||||||||||||| ||||| ||||| ||||| || || |||||||| |||||    
T  11902320 tactactataaatcgcctccaccaccctcaccttcccctcccccaccatactattacaagtctcctccaccaccatctccctcaccacctcctccata 11902417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #91
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 11905131 - 11905260
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||||| |||||||| ||||||||||| || ||| | || || || || |||||||| || || || || || |||||||||||||| || ||    
T  11905131 ctccaccatactattataagtccccacctccaccgtcaccagctccaccaccaccttactattataagtcaccacccccaccatcaccatcccctccccc 11905230  T
Q  171 accatactattatcattctcctcccccacc 200  Q
     ||||| |||||  | |||||||| |||||    
T  11905231 tccatattattacaaatctcctccaccacc 11905260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #92
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 11880177 - 11880229
Alignment:
Q  127 tactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    ||||||||||||||||||||||| || |||||||| || || |||||||||||    
T  11880177 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatacta 11880229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #93
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 11880273 - 11880325
Alignment:
Q  127 tactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    ||||||||||||||||||||||| || |||||||| || || |||||||||||    
T  11880273 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatacta 11880325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #94
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 11902773 - 11902825
Alignment:
Q  127 tactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    ||||||||||||||||||||||| || |||||||| || || |||||||||||    
T  11902773 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatacta 11902825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #95
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 11903969 - 11904033
Alignment:
Q  37 tacaagtcaccacctccacctgtccattattattctccaccatactactataagtcaccacctcc 101  Q
    ||||| |||||||||||||| ||||||||||| || || ||||| ||||| |||||||| |||||    
T  11903969 tacaactcaccacctccacccgtccattattactcacctccatattactacaagtcaccccctcc 11904033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #96
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 11879670 - 11879761
Alignment:
Q  73 ccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatcccc 164  Q
    ||||||||||| || ||||| || || |||||||| || |||||||| || ||||| || ||||| ||||||||||| || ||||| |||||    
T  11879670 ccaccatactattacaagtctcctccaccaccatctccctcacctccaccaccatattactacaagtctcccccaccaccctcaccctcccc 11879761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #97
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 11879967 - 11880058
Alignment:
Q  109 ccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacc 200  Q
    ||||| ||||| || |||||||| ||||||||||||||||| || ||||| || || || ||||||||||| ||| | ||||| || |||||    
T  11879967 ccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactataaatctcccccaccacc 11880058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #98
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 52818783 - 52818692
Alignment:
Q  97 cctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattc 188  Q
    |||||||| || || || ||||| |||||||||||||||||   |||||| || || || || ||||| ||||| |||||||||||||||||    
T  52818783 cctccaccctctccctctcctccacctccatactattacaagagtccccctccaccctctccctccccccctcctccatactattatcattc 52818692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #99
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 52819827 - 52819772
Alignment:
Q  1 tacaagtcacctcctcctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    ||||||||||||||||||||  |||| ||||| |  ||||||||||||||||||||    
T  52819827 tacaagtcacctcctcctccttcaccggtttatatatacaagtcaccacctccacc 52819772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #100
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 52821308 - 52821225
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccat 154  Q
    ||||||| ||||||||||| || || |||||||| || || || ||||| || || ||||||||||| ||||||||||| ||||    
T  52821308 ctccaccttactactataaatctcctcctccaccctctccctcccctcctccaccttactattacaagtctcccccaccaccat 52821225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #101
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 11882498 - 11882568
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatc 161  Q
    ||||| || ||||||||||||||||| || ||||||||||| ||||||  |||||| || ||||| |||||    
T  11882498 tcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatc 11882568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #102
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 11891732 - 11891802
Alignment:
Q  91 tcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatc 161  Q
    ||||| || ||||||||||||||||| || ||||||||||| ||||||  |||||| || ||||| |||||    
T  11891732 tcacctccaccaccatccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatc 11891802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #103
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 11905256 - 11905338
Alignment:
Q  100 ccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    ||||||||||||||||| |  | ||| |||||||||||||| || ||||| ||||| ||||| ||||| || || ||||||||    
T  11905256 ccaccatccccatcaccacaacatccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactatta 11905338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #104
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 11882005 - 11882070
Alignment:
Q  78 atactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcc 143  Q
    |||||| || ||||| |||||||||||||| ||||| ||||| || || || ||||||||||||||    
T  11882005 atactattacaagtccccacctccaccatcaccatcccctcctccaccttattattacaaatctcc 11882070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #105
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 11891239 - 11891304
Alignment:
Q  78 atactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcc 143  Q
    |||||| || ||||| |||||||||||||| ||||| ||||| || || || ||||||||||||||    
T  11891239 atactattacaagtccccacctccaccatcaccatcccctcctccaccttattattacaaatctcc 11891304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #106
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 11905397 - 11905482
Alignment:
Q  97 cctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    |||||||| || || || ||||| || ||||| || ||||||||||| ||||| ||||||||||| ||||| || || ||||||||    
T  11905397 cctccaccttctccctctcctcctcccccatattactacaaatctccaccaccaccatcaccatcaccaccccctccctactatta 11905482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #107
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 11879937 - 11879989
Alignment:
Q  127 tactattacaaatctcccccaccgccatcaccatccccacctccaccatacta 179  Q
    ||||| ||||||||||||||||| || |||||||| || || |||||||||||    
T  11879937 tactactacaaatctcccccacccccttcaccatctcctccaccaccatacta 11879989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #108
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 11882095 - 11882175
Alignment:
Q  120 ccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacc 200  Q
    |||||||||||| || || || || || || ||||||||||| || |||||||||||||||||| | ||||| || |||||    
T  11882095 ccctccatactactataagtcaccacccccaccatcaccatcacctcctccaccatactattataagtctccacctccacc 11882175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #109
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 11891329 - 11891409
Alignment:
Q  120 ccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacc 200  Q
    |||||||||||| || || || || || || ||||||||||| || |||||||||||||||||| | ||||| || |||||    
T  11891329 ccctccatactactataagtcaccacccccaccatcaccatcacctcctccaccatactattataagtctccacctccacc 11891409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #110
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 11902137 - 11902249
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcatt 187  Q
    ||||||||||| || |||||||||||||| || ||||| |||   ||||| || || ||||| || || || ||||| || ||||||||||||||  | |    
T  11902137 aagtcaccaccacctccatccccatcacccccacctccttacgtgtacaagtcaccaccaccaccctcgccttccccgcccccaccatactattacaagt 11902236  T
Q  188 ctcctcccccacc 200  Q
    ||||||| |||||    
T  11902237 ctcctccaccacc 11902249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #111
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 11902305 - 11902393
Alignment:
Q  112 tcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactattatcattctcctcccccacc 200  Q
    |||||||| ||||| ||||| || ||||| || ||||| || ||||| ||||| || ||||||||||||||  | |||||||| |||||    
T  11902305 tcacctccacctccttactactataaatcgcctccaccaccctcaccttcccctcccccaccatactattacaagtctcctccaccacc 11902393  T

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Target: chr1; HSP #112
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 52818846 - 52818746
Alignment:
Q  82 tactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatt 181  Q
    ||||| || ||||| || |||||| ||||||||||||| ||||||||||| ||||||  |||||| || || || || || || || || ||||||||||    
T  52818846 tactacaaatcacctccaccaccaaccccatcacctccacctccatactactacaaaagtccccctccaccctctccctctcctccacctccatactatt 52818747  T
Q  182 a 182  Q
    |    
T  52818746 a 52818746  T

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Target: scaffold1918 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 152 - 58
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 182  Q
    |||||||||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||| || ||||  ||||| || ||||| ||||||||    
T  152 aagtcaccacctcctccatccccatcacctccacctccttattattacaaatcccccccacccccctcacattcccctccaccaccttactatta 58  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 176
Target Start/End: Complemental strand, 24421003 - 24420898
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctcc 170  Q
    ||||||||||   ||| |||||||||||||||||||||||||| || || ||||||||    ||||||||||| || || |||||||| || || |||||    
T  24421003 ctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctcc 24420904  T
Q  171 accata 176  Q
    ||||||    
T  24420903 accata 24420898  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 24421178 - 24421090
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccata 176  Q
    ||||||||||| |||||||||||||| || || ||||||||   |||||| || || ||||| ||||| ||||| || |||||||||||    
T  24421178 aagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccata 24421090  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 24470737 - 24470825
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccata 176  Q
    |||||||||||||||||||||||||| || || || |||||    ||||||||||| || || |||||||| || || |||||||||||    
T  24470737 aagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccata 24470825  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 24470976 - 24471017
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatac 129  Q
    ||||||||||| ||||||||||| ||||| ||||||||||||    
T  24470976 aagtcaccaccaccaccatccccttcaccaccccctccatac 24471017  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 12192333 - 12192370
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacctgtc 60  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  12192333 caccagtttacaagtacaagtcaccccctccacctgtc 12192370  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 12179191 - 12179231
Alignment:
Q  16 cctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  12179191 cctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 12163303 - 12163345
Alignment:
Q  14 ctcctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  12163303 ctccaccaccaccagtttacaagtacaagtcacctcctccacc 12163345  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 12163363 - 12163405
Alignment:
Q  14 ctcctccaacaccagtttacaagtacaagtcaccacctccacc 56  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||    
T  12163363 ctcctccaccaccagtttacaagtacaaatcacctcctccacc 12163405  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 12179165 - 12179198
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacc 56  Q
    |||||||||||||||||||||| |||||||||||    
T  12179165 caccagtttacaagtacaagtccccacctccacc 12179198  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 12192384 - 12192417
Alignment:
Q  23 caccagtttacaagtacaagtcaccacctccacc 56  Q
    |||||||||||||||||||||| |||||||||||    
T  12192384 caccagtttacaagtacaagtccccacctccacc 12192417  T

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Target: scaffold0879 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 4596 - 4684
Alignment:
Q  88 aagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccata 176  Q
    ||||||||||| |||||||||||||| || || ||||||||   |||||| || || ||||| ||||| ||||| || |||||||||||    
T  4596 aagtcaccaccaccaccatccccatctccaccacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccata 4684  T

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Target: scaffold0879; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 4771 - 4858
Alignment:
Q  71 ctccaccatactactataagtcaccacctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcacc 158  Q
    ||||||||||   ||| |||||||||||||||||||||||||| || || ||||||||    ||||||||||| || || ||||||||    
T  4771 ctccaccatatgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcacc 4858  T

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