View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16130_low_9 (Length: 201)
Name: NF16130_low_9
Description: NF16130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16130_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 25325431 - 25325228
Alignment:
| Q |
7 |
ctgaaatgaataaaataatgtatgtcatataagtttgattaacgcaatgaaaacagaagaaattaatatggctttgatcttgaaggtgtttgctttggat |
106 |
Q |
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| T |
25325431 |
ctgaactgaataaaataatgtatgtcatataagtttgattaacgcaatgaaaacagaagaaattaatatggctttgatcttgaaggtgttagcattgaaa |
25325332 |
T |
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| Q |
107 |
g---------ttgcagtagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttccgactttgtgtttggtgctt |
197 |
Q |
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| T |
25325331 |
gaattactaaatgttgcagtagtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttcttactttgtgtttggtgctt |
25325232 |
T |
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| Q |
198 |
caac |
201 |
Q |
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|||| |
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| T |
25325231 |
caac |
25325228 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 25330640 - 25330564
Alignment:
| Q |
118 |
agtgttactagtaatcctcctccctagtgcttatggtttgagcagagatgaattcccttccgactttgtgtttggtg |
194 |
Q |
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| T |
25330640 |
agtgttagtagtaatccttttctctagtgcttatagtttgaacaaagatgaattcccttctgactttgtgtttggtg |
25330564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 21725318 - 21725383
Alignment:
| Q |
130 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ccgactttgtgtttggtg |
194 |
Q |
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| T |
21725318 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtg |
21725383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 21805043 - 21805108
Alignment:
| Q |
130 |
aatcctcctccctagtgcttatggtttgagcagagatgaattccctt-ccgactttgtgtttggtg |
194 |
Q |
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||||||||| | | |||||||| |||||| || |||||| ||||||| |||||||||||||||||| |
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| T |
21805043 |
aatcctccttctttgtgcttatagtttgaacaaagatgagttccctttccgactttgtgtttggtg |
21805108 |
T |
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