View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_high_15 (Length: 404)
Name: NF16131_high_15
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 34093908 - 34093564
Alignment:
| Q |
17 |
attctttaatgctaatctattttatgttgaatttttaagctactaattgatccggtttagtctaaactcatccataaacttaccgatgttcatgcctaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
34093908 |
attctttaatgctaatctattttatgttgaatttttaagctactaattgatccggtttagtctaaactcatccataaccg-accgatgttcatgcctaat |
34093810 |
T |
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| Q |
117 |
tagttacgac---catataaacttacaacaattttcatnnnnnnnnnnnnnnnnnngtacaaaa-ggttgattaacttgctgtaaataacagcttgcatg |
212 |
Q |
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|||||||||| ||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
34093809 |
tagttacgacgaccatataaacttacaagaattttcataaaaaagaaagaaaaaaagtacaaaaaggttcattaacttgctgtaaataacagcttgcatg |
34093710 |
T |
|
| Q |
213 |
agtgactactttggaatagtacataaaaaagaatcagagataaccagaaaaaggtaatgatattagcctgcacctcacttggatcttgagcttctaatta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093709 |
agtgactactttggaatagtacataaaaaagaatcagagataaccagaaaaaggtaatgatattagcctgcacctcacttggatcttgagcttctaatta |
34093610 |
T |
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| Q |
313 |
tgcttgcctttcaagtcttcctgctctaactgaacaaatccttgct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093609 |
tgcttgcctttcaagtcttcctgctctaactgaacaaatccttgct |
34093564 |
T |
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