View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16131_high_17 (Length: 390)
Name: NF16131_high_17
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 152 - 373
Target Start/End: Complemental strand, 2086658 - 2086438
Alignment:
| Q |
152 |
gttacaactataatgtatacaaaagatgtacaatatttattttcttacaaaaatataaaagaaagattaataacattcaacattaatcatcatgatcaag |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2086658 |
gttacaactataatgtatacaaaagatgtacaatatttattttct-acaaaaatataaaagaaagattaataacattcaacattaatcatcatgatcaag |
2086560 |
T |
|
| Q |
252 |
taatgtactaatcaaagacaaagcaccccctaaattcttggctttaatcccaatataatctttgacggtcaaagcacgaaaacgtggcaaagaattatca |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2086559 |
taatgtactaatcaaagacaaagcaccccctaaattcttggctttaatcccaatataatctttgacggtcaaagcacgaaaacgtggcaaagaattatca |
2086460 |
T |
|
| Q |
352 |
ccaacacaaggagataccaaat |
373 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2086459 |
ccaacacaaggagataccaaat |
2086438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 2086794 - 2086703
Alignment:
| Q |
16 |
aagaaaagaaataccaccattttttgttggataggaaagatataccgccactaattacaagtatctttttagactgtatgttacaagtagaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2086794 |
aagaaaagaaataccaccattttttgttggataggaaagatataccgccactaattacaagtatctttttagaccgtatgttacaagtagaa |
2086703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University