View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16131_high_20 (Length: 311)

Name: NF16131_high_20

Description: NF16131

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16131_high_20

[»] chr4 (5 HSPs)

Alignment Details

Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 5)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 300; E-Value: 1e-169

Query Start/End: Original strand, 12 - 311

Target Start/End: Complemental strand, 37808555 - 37808256

Alignment:

Q	12	acagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatt	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37808555	acagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatt	37808456	T

Q	112	taacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaa	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37808455	taacaacttcaataacaacaattttggtaaacaaaatagttcatgttgagcatttacggcatatgcattgactaacaatgtatatgaattaaattcttaa	37808356	T

Q	212	atttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaat	311	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37808355	atttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaat	37808256	T

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Target: chr4; HSP #2

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 217 - 311

Target Start/End: Complemental strand, 37782973 - 37782879

Alignment:

Q	217	tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaat	311	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	37782973	tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaat	37782879	T

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Target: chr4; HSP #3

Raw Score: 44; E-Value: 5e-16

Query Start/End: Original strand, 20 - 119

Target Start/End: Complemental strand, 37783303 - 37783204

Alignment:

Q	20	aaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact	119	Q
		\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \| \|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	37783303	aaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccctgcaataacattcacttgcatttaacaact	37783204	T

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Target: chr4; HSP #4

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 209 - 304

Target Start/End: Complemental strand, 37792331 - 37792236

Alignment:

Q	209	taaatttgtacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaa	304	Q
		\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	37792331	taaagttgtatgagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaa	37792236	T

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Target: chr4; HSP #5

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 220 - 304

Target Start/End: Complemental strand, 37802012 - 37801928

Alignment:

Q	220	gagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaa	304	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\| \|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	37802012	gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaa	37801928	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]