View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16131_high_21 (Length: 299)

Name: NF16131_high_21
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16131_high_21
NF16131_high_21
[»] chr8 (4 HSPs)
chr8 (12-282)||(5669584-5669854)
chr8 (12-282)||(5721838-5722118)
chr8 (12-162)||(5690241-5690398)
chr8 (169-282)||(5691617-5691730)
[»] chr7 (1 HSPs)
chr7 (173-276)||(13052922-13053025)
[»] chr4 (4 HSPs)
chr4 (173-276)||(165009-165112)
chr4 (163-276)||(104032-104145)
chr4 (24-94)||(104578-104648)
chr4 (17-94)||(165184-165261)
[»] chr3 (2 HSPs)
chr3 (163-282)||(12137122-12137241)
chr3 (63-97)||(12137005-12137039)
[»] scaffold0013 (1 HSPs)
scaffold0013 (173-276)||(92132-92235)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 5669584 - 5669854
Alignment:
Q  12 caatatcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5669584 caatatcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattatagtgcatttatatac 5669683  T
Q  112 gacgatgcaataatattctagtaattaacttgcatttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagtct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5669684 gacgatgcaataatattctagtaattaacttgcatttagatatggtaagattatatttacatgcagggtcattccatcttcagaaacccataaatagttt 5669783  T
Q  212 gggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaagcatgcacaa 282  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5669784 gggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaagcaagcatgcacaa 5669854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 5721838 - 5722118
Alignment:
Q  12 caatatcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattata-------gtgcatt 104  Q
    |||||||||||  ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  5721838 caatatcctcaactaggttagtggcaagcaaagcttgaatgatgaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcatt 5721937  T
Q  105 ---tatatacgacgatgcaataatattctagtaattaacttgcatttagatatggtaagattatatttacatgcagggtcattccatcttcagaaaccca 201  Q
       ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||    
T  5721938 atttatatacgatgatgcaataatattctagtaattaacttgcatttagatatggtaagataatttatacatgcagggtcattccatcttcagaaatcca 5722037  T
Q  202 taaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaagcatgcacaa 282  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5722038 taaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaagcaagcatgcacaa 5722118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 5690241 - 5690398
Alignment:
Q  12 caatatcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcattata-------gtgcatt 104  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  5690241 caatatcctcaattaggttagtggcaagcaaagcttgaatgatcaaactagcatcccatgtttggctaccaaaactctgcattataaaaatatgtgcatt 5690340  T
Q  105 tatatacgacgatgcaataatattctagtaattaacttgcatttagatatggtaagat 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  5690341 tatatacgatgatgcaataatattctagtaattaacttgcattaagatatgataagat 5690398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 5691617 - 5691730
Alignment:
Q  169 tacatgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaa 268  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5691617 tacatgcagggtcattccatcttcagcaacccataaatagtctgggagccttgcaagatgcttcttgaatgcatctccatttggatcttccacccaacaa 5691716  T
Q  269 gcaagcatgcacaa 282  Q
    | ||||||||||||    
T  5691717 gaaagcatgcacaa 5691730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 13053025 - 13052922
Alignment:
Q  173 tgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaa 272  Q
    |||| ||||||||||||||| |||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13053025 tgcatggtcattccatcttctgaaacccacaagtaatctgggacccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaa 13052926  T
Q  273 gcat 276  Q
    ||||    
T  13052925 gcat 13052922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 165112 - 165009
Alignment:
Q  173 tgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaa 272  Q
    |||| ||||||||||||||| || | ||| || || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  165112 tgcatggtcattccatcttctgacatccacaagtaatctgggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacccaacaagcaa 165013  T
Q  273 gcat 276  Q
    ||||    
T  165012 gcat 165009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 276
Target Start/End: Complemental strand, 104145 - 104032
Alignment:
Q  163 tatatttacatgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacc 262  Q
    ||||| ||| |||| ||||||||||||||| || | ||| || || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  104145 tatatatacctgcatggtcattccatcttctgacatccacaagtaatcttggacccttgcaagatgcttcttgtaagcatctccatttggatcttccacc 104046  T
Q  263 caacaagcaagcat 276  Q
    ||||||||||||||    
T  104045 caacaagcaagcat 104032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 104648 - 104578
Alignment:
Q  24 ttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcatt 94  Q
    ||||||||| |||||||||||||| || |   |||| ||||||||||  ||||||||||||||||||||||    
T  104648 ttaggttagcggcaagcaaagcttgaacggcaaaaccagcatcccattcttggctaccaaaactctgcatt 104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 165261 - 165184
Alignment:
Q  17 tcctcagttaggttagtggcaagcaaagcttcaatgatcaaactagcatcccatgtttggctaccaaaactctgcatt 94  Q
    |||||| ||||||| |||||||||||||||| ||||   ||||||| |||||||  |||||| |||||| ||||||||    
T  165261 tcctcaattaggttggtggcaagcaaagcttgaatggcaaaactagtatcccatacttggctcccaaaagtctgcatt 165184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 282
Target Start/End: Original strand, 12137122 - 12137241
Alignment:
Q  163 tatatttacatgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacc 262  Q
    ||||| ||| |||| ||||||||| ||||| ||||||||||| || || || | |||||| |||||||||||||||||||||||||||||||||||||||    
T  12137122 tatatatacctgcatggtcattccgtcttctgaaacccataagtaatcgggcacccttgcgagatgcttcttgaaagcatctccatttggatcttccacc 12137221  T
Q  263 caacaagcaagcatgcacaa 282  Q
    ||||||| |||||| |||||    
T  12137222 caacaagaaagcatacacaa 12137241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 12137005 - 12137039
Alignment:
Q  63 catcccatgtttggctaccaaaactctgcattata 97  Q
    |||||||| ||||||||||||||||||||||||||    
T  12137005 catcccatttttggctaccaaaactctgcattata 12137039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 92132 - 92235
Alignment:
Q  173 tgcagggtcattccatcttcagaaacccataaatagtctgggagccttgcaagatgcttcttgaaagcatctccatttggatcttccacccaacaagcaa 272  Q
    |||| ||||||||||||||| |||| ||||||||| || |||| |||||||||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  92132 tgcatggtcattccatcttcggaaatccataaataatcggggacccttgcaagatgttttttgaaagcatctccatttggatcttcaacccaacaggcaa 92231  T
Q  273 gcat 276  Q
    ||||    
T  92232 gcat 92235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University