View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_high_22 (Length: 295)
Name: NF16131_high_22
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 44 - 277
Target Start/End: Complemental strand, 53744846 - 53744613
Alignment:
| Q |
44 |
tggaatcatcgccatcatcaacgacggaagattcaaagaagatacaagttcgttcatcactcgttgaatcaattcgcggctgcggtctctccggcatgcg |
143 |
Q |
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| T |
53744846 |
tggaatcatcgccatcatcaacgacggaagattcaaagaagatacaagttcgttcatcactcgttgaatcaattcgcggctgcggtctctccggcatgcg |
53744747 |
T |
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| Q |
144 |
tattgacaaagaagacttgaagaagcagcttactttgccacagtatcttcgcttcgcaatgcgtgattccattcgtcttcaagatccttccgctggagaa |
243 |
Q |
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| T |
53744746 |
tattgacaaagaagacttgaagaagcagcttactttgccacagtatcttcgctttgcaatgcgtgattccattcgtcttcaagatccttccgccggagaa |
53744647 |
T |
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| Q |
244 |
actctttaccggaatcgcgctgaaggagaagact |
277 |
Q |
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| T |
53744646 |
actctttaccggaatcgcgctgaaggagaagact |
53744613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 53744893 - 53744865
Alignment:
| Q |
1 |
caacacagcaccacagaagattcatcttc |
29 |
Q |
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| T |
53744893 |
caacacagcaccacagaagattcatcttc |
53744865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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