View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_high_23 (Length: 295)
Name: NF16131_high_23
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_23 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 4007930 - 4008216
Alignment:
| Q |
9 |
gagatgaagcgattcaatatttaggggaagaatattgataaaatatagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaagaa |
108 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4007930 |
gagaagaagagattcaatatttaggggaagaatattgataaaatatagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaagaa |
4008029 |
T |
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| Q |
109 |
aggaagaaagattagaaccgttgtttattaactttctttgtccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctgta |
208 |
Q |
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| T |
4008030 |
aggaagaaagattagaaccgttgtttattaactttctttgtccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctata |
4008129 |
T |
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| Q |
209 |
actactaataatttcataaaactactactaattttttagggtatggttttttgtctcccatcttatagaaaaccacttctcttgttt |
295 |
Q |
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| T |
4008130 |
actactaataatttcataaaactactactaattttttagggtatggttttttgtctcccatcttatagaaaaccacttctcttgttt |
4008216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 6212819 - 6213007
Alignment:
| Q |
50 |
aatatagaaattagtagtaacaat--tatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaactttcttt |
147 |
Q |
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| T |
6212819 |
aatataaaaattaacagtaacaatattatcccaattcgagaagggacatctctcctaagaaagggaggaagactagaacttttgtttattaatttacttc |
6212918 |
T |
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| Q |
148 |
gtccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactac |
236 |
Q |
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| T |
6212919 |
attatttatttacacattacaatcttaatataacacaccaataaataactaacttcctataacaactaataacttcataaaactactac |
6213007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 521546 - 521719
Alignment:
| Q |
67 |
taacaattatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaactttctttgtccttcattcacacatta |
166 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||| || |||| |||||| |||||||||| || ||| | ||||||||||||||| |
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| T |
521546 |
taacaattatcccaattcgagaaggaacatgtctcctaagaaagagaggaagagtagaacttttgtttattactttacttcattattcattcacacatta |
521645 |
T |
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| Q |
167 |
caaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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| T |
521646 |
caaccttaatataacacaccaataagtaactaacttcctataactactaataacttcataaaactactactaat |
521719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 13017709 - 13017629
Alignment:
| Q |
160 |
cacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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| T |
13017709 |
cacaatacaaccttaatataacacaccaataagtaactaccttcttataactactaataacttcacaaagctactactaat |
13017629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 31466536 - 31466735
Alignment:
| Q |
41 |
tattgataaaatatagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaac |
140 |
Q |
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| T |
31466536 |
tattgatagaatatagaaattaacagatacaattatcccaattcgagaagggacatctctcctaagaaagggaggaagactagaacttttatttattaat |
31466635 |
T |
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| Q |
141 |
tttctttgtccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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| T |
31466636 |
ttgcttgattattcatttacacattacaatcttaatataacacaccaataagtaactaacttcctataactacttatagcttcataaaactactactaat |
31466735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 33738513 - 33738700
Alignment:
| Q |
50 |
aatatagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaag-aaaggaagaaagattagaaccgttgtttattaactttctttg |
148 |
Q |
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| T |
33738513 |
aatatagaaattaacagtaacaattatcccaattcaagaagggacatctctcttaaggaaagggaggaagactagaacttttgtttattaacttgcttga |
33738612 |
T |
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| Q |
149 |
tccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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| || ||||||||||||||||| |||||||||| |||||| | ||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
33738613 |
ttatttattcacacattacaaccttaatataacataccaataagtaactaccttc----atatactaataacttcataaaactactactaat |
33738700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 33843086 - 33842889
Alignment:
| Q |
42 |
attgataaaatatagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaact |
141 |
Q |
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|||||| ||| |||||||||| | | |||||||| ||||||| ||| | || |||||||||||||| | || ||||||||||| ||||||||||||| |
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| T |
33843086 |
attgatgaaacatagaaattaatggcaacaattaggccaattcgagaaaggacgtgtcttctaagaaatggagtaagattagaacttttgtttattaact |
33842987 |
T |
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| Q |
142 |
ttctttgtccttcattcacacattacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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| || | |||||||||| |||||||| |||||||||||| |||| | |||||||||| || |||| ||||||||||||||||||||| ||||||| |
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| T |
33842986 |
tgtttgattattcattcacatgttacaaccttaatataacacatcaataagtaactacctt-ctataacaactaataatttcataaaactattactaat |
33842889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 14234409 - 14234234
Alignment:
| Q |
66 |
gtaacaattatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaactttctttg-tccttcattcacacat |
164 |
Q |
| |
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|||||||| |||| ||||| ||||| |||||||| |||||||||| ||||||| || ||| |||||||||| ||| ||| | |||||| | |||| |
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| T |
14234409 |
gtaacaatcatccaaattctagaagggacatgtctcctaagaaagggagaaagactaaaacgtttgtttattacttttgcttgattattcatttatacat |
14234310 |
T |
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| Q |
165 |
tacaaccataatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactactaat |
240 |
Q |
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||||| | ||||||||||||||||| | ||||||| ||||| |||||||||||| |||||||||||||||||||| |
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| T |
14234309 |
tacaatcttaatataacacaccaataagtaactacattcctataactactaatagcttcataaaactactactaat |
14234234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 39631570 - 39631651
Alignment:
| Q |
152 |
ttcattcacacattacaaccataa-tataacacaccaatgaataactaccttcctgtaactactaataatttcataaaacta |
232 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |||||||||||| || ||||||||||||| ||| |||||||| |
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| T |
39631570 |
ttcattcacacattacaactttaaatataacacaccaataaataactaccttgctataactactaataacttcttaaaacta |
39631651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 30088093 - 30088030
Alignment:
| Q |
173 |
taatataacacaccaatgaataactaccttcctgtaactactaataatttcataaaactactac |
236 |
Q |
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||||||||||||||||| |||||| ||| | ||||||||||||| |||||||||||||||| |
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| T |
30088093 |
taatataacacaccaatatgtaactatctttttataactactaataacttcataaaactactac |
30088030 |
T |
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