View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16131_high_29 (Length: 246)
Name: NF16131_high_29
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34486218 - 34486443
Alignment:
| Q |
1 |
tatactaattaagttcataataaatattataaagtttgtaattaataagctttgggattcaaatcaacctctggattgcttgagtgaagagctcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34486218 |
tatactaattaagttcataataaatattataaagtttgt---taataagctttgggattcaaatcaacctctggattgcttgagtgaagagctcaagttc |
34486314 |
T |
|
| Q |
101 |
ttcaaccgtgccataggcatcataagtatcatctaaaagagaaatacacacaaccaatttcccccctatctttcttgaagtggcatatttaagctcataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
34486315 |
ttcaaccgtgccataggcatcataagtatcatctaaaagagaaatacatgctaccaattttcccactatctttcttgaagtggtgtatttaggctcatag |
34486414 |
T |
|
| Q |
201 |
gacatagccaatggccaaaagtaagcttc |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
34486415 |
gacatacacaatggccaaaagtaagcttc |
34486443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 34474617 - 34474792
Alignment:
| Q |
58 |
ttcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccata----ggcatcataagtatcatctaaaagagaaatacacacaa |
153 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
34474617 |
ttcaaatcaacctctggattgcttgtgtgaagagttcaagttcttcaactgtgccatatataggcatcataagtatcatctagaagagaaatacacacta |
34474716 |
T |
|
| Q |
154 |
ccaatttcccccctatctttcttgaagtggcatatttaagctcataagacatagccaatggccaaaagtaagcttc |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34474717 |
ccaatttcccccctatctttcttgaagtggcatatttaagctcataagacatagccaatggccaaaagtaagcttc |
34474792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 34449574 - 34449738
Alignment:
| Q |
62 |
aatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaatacacacaaccaatttc |
161 |
Q |
| |
|
||||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
34449574 |
aatcaacctttgcattgcttctgtgaaaagttcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaacacatgttaccaatttt |
34449673 |
T |
|
| Q |
162 |
ccccctatctttcttgaagtggcatatttaagctcataagacatagccaatggccaaaagtaagc |
226 |
Q |
| |
|
||| | |||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34449674 |
cccaccatctttctagctgtgctatatttaggctcataagacatagccaatggccaaaagtaagc |
34449738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 34460944 - 34461031
Alignment:
| Q |
59 |
tcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaata |
146 |
Q |
| |
|
||||||||||||||||||||| || ||||| || |||||||||||||| ||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
34460944 |
tcaaatcaacctctggattgcctgtgtgaatagttcaagttcttcaactgtgccgtaggcatcataagtatcatctacaagagaaata |
34461031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 1594135 - 1594267
Alignment:
| Q |
50 |
ctttgggattcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaatacac |
149 |
Q |
| |
|
|||| |||||||||||||||| | ||||| || |||||||| |||||||||||||||||||| ||| |||||| |||||||||| ||| |||||||| |
|
|
| T |
1594135 |
cttttggattcaaatcaacctttctattgcctgcgtgaagagttcaagttcttcaaccgtgccgtagttatcatatgtatcatctagaagtgaaatacat |
1594234 |
T |
|
| Q |
150 |
acaaccaatttcccccctatctttcttgaagtg |
182 |
Q |
| |
|
| | || ||||||||||||||||||||||||| |
|
|
| T |
1594235 |
gctatcagtttcccccctatctttcttgaagtg |
1594267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 6130594 - 6130513
Alignment:
| Q |
61 |
aaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagaga |
142 |
Q |
| |
|
|||||||||| |||||||| || |||||||| |||||||||||||| || ||| | |||||||||||||||||||||||||| |
|
|
| T |
6130594 |
aaatcaacctttggattgcctgtgtgaagagttcaagttcttcaactgtaccaaatgcatcataagtatcatctaaaagaga |
6130513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University