View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_high_33 (Length: 233)
Name: NF16131_high_33
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 32703728 - 32703526
Alignment:
| Q |
15 |
caaaggcaatatttacttgg-ccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaaaatgtcg |
113 |
Q |
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| T |
32703728 |
caaaggcaatatttacttgggccagcacaagcccctcaagtgtcattaaggcttactatgaacaatatagaaaagatttctcattttttctaaaatgtcg |
32703629 |
T |
|
| Q |
114 |
tgccctagagttagttgaaggtgggatcctgattcttactattatttg-aagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagt |
212 |
Q |
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|||||||||||||||||||||||||| |||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32703628 |
tgccctagagttagttgaaggtgggagcctggttcttacttttattggaaagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaagt |
32703529 |
T |
|
| Q |
213 |
tat |
215 |
Q |
| |
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||| |
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|
| T |
32703528 |
tat |
32703526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 32627430 - 32627381
Alignment:
| Q |
161 |
gaagaaaaagcgaagatccatcaagcaaagagtgttgttacgtttgggaa |
210 |
Q |
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| T |
32627430 |
gaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaa |
32627381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 21943305 - 21943190
Alignment:
| Q |
19 |
ggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaaaatgtcgtgccc |
118 |
Q |
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| T |
21943305 |
ggcaacatttacttggcgaccacaagcccctcaaatgtcttcaaggcttactatgagcaatttcatagagatttatctctttttctaaagtgtcgtgccc |
21943206 |
T |
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| Q |
119 |
tagagttagttgaagg |
134 |
Q |
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||| |||||||||| |
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| T |
21943205 |
aagaactagttgaagg |
21943190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 27736452 - 27736355
Alignment:
| Q |
37 |
agcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaaaatgtcgtgccctagagttagttgaagg |
134 |
Q |
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|||||||||||||||| ||||| ||||||||||| | ||||| ||| ||||||||| |||||||| |||||||||| ||| ||||||||||| |
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| T |
27736452 |
agcacaagcccctcaaacgtcatcaaggcttactacaagcaatttcgaacagatttctctttttttcttcgatgtcgtgccaaagaattagttgaagg |
27736355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 5811197 - 5811079
Alignment:
| Q |
19 |
ggcaatatttacttggccagcacaagcccctcaagtgtcattaaggcttactatgaaaaatttagaaaagatttctcattttttctaaaatgtcgtgccc |
118 |
Q |
| |
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||||| |||||| || | |||||||||||||||| |||| ||||||||||| | ||||| || ||||||||| |||||||| || ||||||||| |
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| T |
5811197 |
ggcaacatttacctgacgagcacaagcccctcaaatgtccacaaggcttactacaagcaatttcaaacagatttctctttttttctcaagtgtcgtgccg |
5811098 |
T |
|
| Q |
119 |
tagagttagttgaaggtgg |
137 |
Q |
| |
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||| ||||||||||||| |
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| T |
5811097 |
aagaactagttgaaggtgg |
5811079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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