View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_high_4 (Length: 538)
Name: NF16131_high_4
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Original strand, 38915281 - 38915787
Alignment:
| Q |
17 |
gatgaagtggaatgctcaagcagaaaggatcgtgactacccgttagaagacttgcctaattatgatacaagtacgtttttcttgttagttgctatgctct |
116 |
Q |
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| T |
38915281 |
gatgaagtggaatgctcaagcagaaaggatcgtgactacccgttagaagacttgcctaattatgatacaagtacgtttttcttattagttgctatgctct |
38915380 |
T |
|
| Q |
117 |
gaccaaaagactcccatataacattgttaagtgctgactaaaatttgactccatgcagttaaaagtaaaatcagtcctagtaaaattcaggtaaaaaatc |
216 |
Q |
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| T |
38915381 |
gaccaaaagactcccatataacattgttaagtgctgactaaaatttgactccatgcagttaaaagtaaaatcagtcctagtaaaattcaggtaaaaaatc |
38915480 |
T |
|
| Q |
217 |
ttcatctctttggatctatgagtttttctccggtgctatccgcctgtggatgatttgggttttgggatggcaggttctcccggagtatggatctaaatgt |
316 |
Q |
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| T |
38915481 |
ttcatctctttggatctatgagtttttctccggtgctatccgcctgtggatgatttgggttttgggatggcaggttctcccggagtatggatctaaatgt |
38915580 |
T |
|
| Q |
317 |
gcaattaatgttgaagaaagtagtagttctttcaaaggctcgagtccaaatacaggcactaaaacttccagacgttccaggtcattgagcaatgatatag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38915581 |
gcaattaatgttgaagaaagtagtagttctttcaaaggctcgagtccaaatacaggcactaaaacttccagacattccaggtcattgagcaatgatatag |
38915680 |
T |
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| Q |
417 |
ttgctgaaccttactttcctagtggttctaaatgcgatacagatgtctctggcaaacaaaatggtgtagcccatcccatgatgcatcattccctacatga |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38915681 |
ttgctgaaccttactttcctagtggttctaaatgcgatacagatgtctctggcaaacaaaatggtgtagcccatcccatgatgcatcattccctacatga |
38915780 |
T |
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| Q |
517 |
tgtgagt |
523 |
Q |
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| T |
38915781 |
tgtgagt |
38915787 |
T |
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