View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_1 (Length: 811)
Name: NF16131_low_1
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 87 - 638
Target Start/End: Original strand, 4310581 - 4311132
Alignment:
| Q |
87 |
ttcaatttatggtcgtgatcaactttgtaaaatagccaaaatcagatcacaactaaatgtataattaaaccaacatgaaatagattaattaatcgcccta |
186 |
Q |
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| T |
4310581 |
ttcaatttatggtcgtgatcaactttgtaaaatagccaaaatcagatcacaactaaatgtataattaaaccaacatgaaatagattaattaatcgcccta |
4310680 |
T |
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| Q |
187 |
agactaaactcataacagaggcattaaagaattgaagttttaaggtttatcaagatttgcttttctatgataacaatcaattattaaacttaaatttgga |
286 |
Q |
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| T |
4310681 |
aaactaaactcataacagaggcattaaagaattgaagttttaaggtttatcaagatttgcttttctatgataacaatcaattattaaacttaaatttgga |
4310780 |
T |
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| Q |
287 |
aaataatatgtttaatcatcatgcttgtttcattaaattccaggttgtgcattctaagaccttttctttttaataacacaactcttatactattaaatgt |
386 |
Q |
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| T |
4310781 |
aaataatatgtttaatcatcatgcttgtttcattaaattccagggtgtgcattctaagaccttttctttttaataacgcaactcttatactattaaatgt |
4310880 |
T |
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| Q |
387 |
atccgttattgtccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtttccaaaatttgatt |
486 |
Q |
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| T |
4310881 |
atacgttatcgtccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtctccaaaatttgatt |
4310980 |
T |
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| Q |
487 |
caagtagtctaatccaaagacaattacagaaattggtttcacaagacccttnnnnnnnnnctacgagtgtaactagaactagctgcaaaactgggtccgt |
586 |
Q |
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| T |
4310981 |
caagtagtctaatccaaagacaattacagaaattggtttcacaagacccttaaaagaaaactacgagtgtaactagaactagctgcaaaactgggtccgt |
4311080 |
T |
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| Q |
587 |
ccagctctttactcattcacaactgataacttatatgcaatatatgtaccaa |
638 |
Q |
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| T |
4311081 |
ccagctctttactcattcacaactgataacttatatgcaatatatgtaccaa |
4311132 |
T |
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