View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_10 (Length: 426)
Name: NF16131_low_10
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 35669535 - 35669873
Alignment:
| Q |
18 |
agtttccatcagagtttaccaaagctacaaagagtcaaccagagaaatattgcaaaataaattggtatactaagaaactacatttaaataaaattggaaa |
117 |
Q |
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| T |
35669535 |
agtttccatcagagtttaccaaagctacaaagagtcagccagagaaatagtgcaaaataaattggtatactaagaaactacatttaaataaaattggaaa |
35669634 |
T |
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| Q |
118 |
atttgaaacagttttaagaaaggtagctatgagttctaaccttgagaactggttatgtaaagacacttaatgcaaaattgataagaaaagcatcatgaga |
217 |
Q |
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| T |
35669635 |
atttgaaactgttttaagaaaggtagctatgagttctaaccttgagaactggttatgtaaagacacttaatgcaaaattgataagaaaagcatcatgaga |
35669734 |
T |
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| Q |
218 |
gaacacacaatcacatgcagtgaaagggacaaaagttacaatcagggaagaagataagaatatgatgctatagctttatcagaaagcctcatgaacagaa |
317 |
Q |
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| T |
35669735 |
gaacacacaatcacatgcagtgaaagggacaaaagttacaatcagggaagaagataagaatatgatgctatagctttatcagaaagcctcatgaacagaa |
35669834 |
T |
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| Q |
318 |
acatgcattttatatctaacatgtgtacgtgacatgtga |
356 |
Q |
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| T |
35669835 |
acatgcattttatatctaacatgtgtacgtgacatgtga |
35669873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 416
Target Start/End: Original strand, 35669895 - 35669926
Alignment:
| Q |
385 |
accaaagtaacatattattattatgacctatg |
416 |
Q |
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| T |
35669895 |
accaaagtaacatattattattatgacctatg |
35669926 |
T |
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