View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_12 (Length: 418)
Name: NF16131_low_12
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 24659792 - 24660187
Alignment:
| Q |
7 |
tccaagaatatattattccaattcctttatagttttcttttatacattagcaaatatcaatactcttcaactgcatcaaccttacaaggaaatgaaacag |
106 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24659792 |
tccaagaagatattcttccaattcctttatagttttcttttatacattagcaaatatcaatactcttcaactgcatcaaccttacaaggaaatgaaactg |
24659891 |
T |
|
| Q |
107 |
atttacatgctttgcttgacttcaagagtagaataactcaagatccatttcaagccctaagtttatggaatgattcaatccaccactgttattggttagg |
206 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
24659892 |
atttacatgctttacttgacttcaagagtagaataactcaagatccatttcaagccctaagtttatggaatgattcaatccaccactgcaactggttagg |
24659991 |
T |
|
| Q |
207 |
aatcacttgtaacatctccaatggaagagtcatgcatttgatccttgcagatatgacactagctggaacacttccaccatcaataggaaatcttacatac |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24659992 |
aatcacttgtaacatctccaatggaagagtcatgcatttgatccttgcagatatgacactagctggaacactttcaccatcaataggaaatcttacatac |
24660091 |
T |
|
| Q |
307 |
cttacaaaactcaaccttagaaataatagtttccatggagagtttcctcaacaagttggaaatttactatatcttcaacatctaaatattagttat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24660092 |
cttacaaaactcaaccttagaaataatagtttccatggagagtttcctcaacaagttggaaatctactatatcttcaacatctaaatattagttat |
24660187 |
T |
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