View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16131_low_13 (Length: 414)

Name: NF16131_low_13
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16131_low_13
NF16131_low_13
[»] chr5 (7 HSPs)
chr5 (13-395)||(1601512-1601894)
chr5 (13-195)||(8533955-8534151)
chr5 (13-191)||(8545524-8545720)
chr5 (13-171)||(8527388-8527560)
chr5 (36-114)||(9001906-9001984)
chr5 (134-173)||(8677043-8677082)
chr5 (36-78)||(8640109-8640151)
[»] chr7 (1 HSPs)
chr7 (13-195)||(48363144-48363342)
[»] chr1 (2 HSPs)
chr1 (53-195)||(26325082-26325229)
chr1 (35-76)||(5129472-5129513)
[»] chr4 (2 HSPs)
chr4 (13-135)||(9441772-9441894)
chr4 (134-171)||(9441722-9441759)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 1601512 - 1601894
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601512 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 1601611  T
Q  113 gctttgctgaatagtttagatttgaatttcaattttggtggcatgatattgaaccctttacatccatttgtcacattcactttctcattgtcctaaatca 212  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601612 gctttgctgaatagtttagatttgaatttcaattttgggggcatgatattgaaccctttacatccatttgtcacattcactttctcattgtcctaaatca 1601711  T
Q  213 atccgtttggtgctatgatggctatttctatctatatttccggttcataggatctatagtcaaaaggtgtggcaaatgatttggaatgctcttgttttct 312  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1601712 atccttttggtgctatgatggctatttctatctatatttccggttcataggatctatagtcaaaaggtgtggcaaatgatttcgaatgctcttgttttct 1601811  T
Q  313 ccttagttcatgatatttatttatatccaatactacatataaatgtaaaccaagtaattggtttttgttttgtgtgtgggaga 395  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  1601812 ccttagttcatgatatttatttatatcttatactacatataaatgttaaacaagtaattggtttttgttttgtgtgtgggaga 1601894  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 8534151 - 8533955
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    |||||||||  |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||| |    
T  8534151 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaagcctgaattataatgaattatctatttgagta 8534052  T
Q  113 gctttgctgaatagtttagat--------------ttgaatttcaattttggtggcatgatattgaaccctttacatccatttgtcacattcacttt 195  Q
    |||||| ||||| | ||||||              |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  8534051 gctttgatgaattgattagatttaaaatttaatgattgaatttcaattttggtggcatgatattgaaccctttacatccttttgtcacgttcacttt 8533955  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 8545524 - 8545720
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||   ||||||||    
T  8545524 tcatcaatcctgatttcctttattcttcgtctttaactgctccttgaaaagagtttctgcatccctgagcgttaattataatgaattattgatttgagga 8545623  T
Q  113 gctttgctgaatagtttagattt---------------gaatttcaattttggtggcatg---atattgaaccctttacatccatttgtcacattca 191  Q
    |||||| ||||||||||||||||               ||||||||||||||||||||||   |||||||| ||||||||||| |||||||||||||    
T  8545624 gctttgatgaatagtttagatttaaatttttaatgattgaatttcaattttggtggcatgataatattgaatcctttacatccttttgtcacattca 8545720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 8527560 - 8527388
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    |||||||||  |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||  |||||| |    
T  8527560 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagta 8527461  T
Q  113 gctttgctgaatagtttagat--------------ttgaatttcaattttggtggcatgatattgaacccttt 171  Q
    |||| | ||||| | ||||||              ||||||||||||||||||||||||||||||||||||||    
T  8527460 gcttcgatgaatcgattagatttaaaatttaatgattgaatttcaattttggtggcatgatattgaacccttt 8527388  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 9001984 - 9001906
Alignment:
Q  36 tcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgaggagc 114  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||| || || || ||||||  |||| ||||||||||    
T  9001984 tcttagtctttaactgctcgttgaaaagtgtttttgaatccctaagggtgaaatacaatgaacgatcaatttgaggagc 9001906  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 8677082 - 8677043
Alignment:
Q  134 ttgaatttcaattttggtggcatgatattgaaccctttac 173  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  8677082 ttgaatttcaatttttttggcatgatattgaaccctttac 8677043  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 8640151 - 8640109
Alignment:
Q  36 tcttagtctttaactgctccttgaaaagggtttctgaatccct 78  Q
    |||| |||||||||||||||||||||| ||| |||||||||||    
T  8640151 tcttggtctttaactgctccttgaaaaaggtctctgaatccct 8640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 48363144 - 48363342
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||    
T  48363144 tcatcaatcctgctttccttgattcttaatctttaactgctccttgaaaagggtttctgaatccctaaacgttaatcataatgagttatcaatttgagga 48363243  T
Q  113 gctttgctgaatagtttagat---------------ttgaatttcaattttggtggcatgatattgaaccc-tttacatccatttgtcacattcacttt 195  Q
    |||||| ||||||||||||||               ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  48363244 gctttgatgaatagtttagatttaaatttttaatgattgaatttcaattttggtggcatgatattgaacccttttacatccttttgtcacgttcacttt 48363342  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 26325082 - 26325229
Alignment:
Q  53 tccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgaggagctttgctgaatagtttagat-----ttgaatttcaattt 147  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||  |||||| ||||| | ||||| | ||||||     ||||||||||||||    
T  26325082 tccttgaaaagggtttctgaatccctaagcctgaattataatgatttatctatttgagtagcttcgatgaattgattagatttaaattgaatttcaattt 26325181  T
Q  148 tggtggcatgatattgaaccctttacatccatttgtcacattcacttt 195  Q
    |||||||||| ||||||||||||||||||| | |||||  ||||||||    
T  26325182 tggtggcatggtattgaaccctttacatccttctgtcatgttcacttt 26325229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 5129513 - 5129472
Alignment:
Q  35 ttcttagtctttaactgctccttgaaaagggtttctgaatcc 76  Q
    ||||||||||||| ||||||||||||||| |||| |||||||    
T  5129513 ttcttagtctttatctgctccttgaaaagcgtttttgaatcc 5129472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 9441894 - 9441772
Alignment:
Q  13 tcatcaatcctgatttccttgattcttagtctttaactgctccttgaaaagggtttctgaatccctaagcgttaattataatgaattatcagtttgagga 112  Q
    |||||||||  |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||||||||  |||||| |    
T  9441894 tcatcaatctggatttcctagattcctagtcattaactgctccttgaaaagggtttctgaatccctaaacctgaattataatgaattatctatttgagta 9441795  T
Q  113 gctttgctgaatagtttagattt 135  Q
    |||| | ||||| | ||||||||    
T  9441794 gcttcgatgaatcgattagattt 9441772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 9441759 - 9441722
Alignment:
Q  134 ttgaatttcaattttggtggcatgatattgaacccttt 171  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9441759 ttgaatttaaattttggtggcatgatattgaacccttt 9441722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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