View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_14 (Length: 412)
Name: NF16131_low_14
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 152 - 297
Target Start/End: Original strand, 38973436 - 38973577
Alignment:
| Q |
152 |
gacaaaagaacctattaaagatcacaaaatagcaaattatcgtataagaaacaatttggctaaaagaataagcatagcgactacttacttacagttggtg |
251 |
Q |
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| T |
38973436 |
gacaaaagaacctactaaagatcacaaaatagcaaattatcgtataagaaacaatttggctaaaagaataagcatagcgac----tacttacagttggtg |
38973531 |
T |
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| Q |
252 |
gggttggtttgacggattggtaagggcccacaaagagtgatataag |
297 |
Q |
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| T |
38973532 |
gggttggtttgacggattggtaagggcccacaaagagtgatataag |
38973577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 38964914 - 38965045
Alignment:
| Q |
6 |
agcagcacagaccttttgagaaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggccaccattagaagctccata |
105 |
Q |
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| T |
38964914 |
agcaacacaaaccttttgagaaaccacacatccaagcaccattttctcccctgataactcctccacagccagcaaaaaggccaccattagaagctccata |
38965013 |
T |
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| Q |
106 |
tgtattaagccttgtccaacgtactaaagatc |
137 |
Q |
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| T |
38965014 |
tgtattaatccttgtccaacctactaaagatc |
38965045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 396
Target Start/End: Original strand, 38974065 - 38974158
Alignment:
| Q |
303 |
aaaacaacatttaaatgtggatctactttcacaacaagtgatgctaaggttaaacttatcatgacatataaaatgtggttaatattgtgggatc |
396 |
Q |
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| T |
38974065 |
aaaacaacatttaactgtggatctactttcacaacaagtgatgctaaggttaaacttgtcatgacatataaaatgtggttagtatcgtgggatc |
38974158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 14793314 - 14793413
Alignment:
| Q |
26 |
aaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggccaccattagaagctccatatgtattaagccttgtccaac |
125 |
Q |
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| T |
14793314 |
aaaccgcacatccaagcaccattttctcccctgataactcctccacaaccggcattaaggccgcctttggaagctccatcagtattaagtcttatccaac |
14793413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 50709467 - 50709346
Alignment:
| Q |
236 |
ttacttacagttggtggggttggtttgacggattggtaagggcccacaaaga--gtgatataagcagtgaaaacaacatttaaatgtggatctactttca |
333 |
Q |
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| T |
50709467 |
ttacataccgttggtgcggttggtttaacggatcggtaacatccgacaaacacagtgatgcaagcagttaaaacaacatttaaatttggatctactttca |
50709368 |
T |
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| Q |
334 |
caacaagtgatgctaaggttaa |
355 |
Q |
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|||||| | |||||||||||| |
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| T |
50709367 |
aaacaagcggtgctaaggttaa |
50709346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 42581680 - 42581611
Alignment:
| Q |
16 |
accttttgagaaaccacacatccaagcacccttttgtcccctgataactcctccacaaccagcaaaaaggc |
86 |
Q |
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| T |
42581680 |
acctttcgaaaaaccgcacatcaaagcaccattttctcccc-gatgactcctccacaaccagcaagaaggc |
42581611 |
T |
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