View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_16 (Length: 390)
Name: NF16131_low_16
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 3482441 - 3482796
Alignment:
| Q |
18 |
cctttgtgatattgtttaaagaactaaaagaagtaagtttgcatnnnnnnnngtgtactttgacaataataacattttatatttctaagacatttttcat |
117 |
Q |
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| T |
3482441 |
cctttgtgatattgtttaaagaattaaaagaagtaagtttgcataaaagaatgtgtactttgacaataataacattttatattt-----acatttttcat |
3482535 |
T |
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| Q |
118 |
tgtagaactcattagcaaaatctttaaataaaactgtacagcacaaattatatgtttactttggacgccttnnnnnnngttcaatgaannnnnnnnccat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
3482536 |
tgtagaactcattagcaaaatctttaaataaaactgtacagcacaaattat--gtttactttggacgccttaaaaaaagttcaatgaaatttttttccat |
3482633 |
T |
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| Q |
218 |
gatgacttttggatggggttttcgactctatttacttgtgatctttaccaccaaactgatctctatcaccattaaaattgcattattcttgtatgatgat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3482634 |
gatgacttttggatggggttttcgactctatttacttgtgatctttaccaccaaactgatctctaccaccattaaaattgcattattcttgtatgatgat |
3482733 |
T |
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| Q |
318 |
tgtttaatagatctcttaatttgctcaatcgatcgaatcgtaacttttgatcggctttttcat |
380 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||||||| |
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| T |
3482734 |
tgtttaatagacctcttaatttgctcaatcgatgagatcgtaatttttaatcggctttttcat |
3482796 |
T |
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