View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_18 (Length: 380)
Name: NF16131_low_18
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 24 - 360
Target Start/End: Original strand, 40219822 - 40220158
Alignment:
| Q |
24 |
cacctccataaaaagcagggatttcaaccactccgccattaatttcctgctgcaagtccttaggagccttgccatccacggtacatccaacagacacaca |
123 |
Q |
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| T |
40219822 |
cacctccttaaaaagcagggatttcaaccactccgccattaatttcctgctgcaagtccttaggagccttgccatccacggtacatccaacagacacaca |
40219921 |
T |
|
| Q |
124 |
cgtaccaagaacctcattaacagtgccagaaagtttcttcgccatcgacctcggactcataaccctagcaatgtcaatgacatcctcaagggatatgttc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40219922 |
cgtaccaagaacctcattaacagtgccagaaagtttcttcgccatcgacctcggactcataaccctagcaatgtcaatgacatcctcaagggatatgttc |
40220021 |
T |
|
| Q |
224 |
ccattgtggttgatatgcttggtcttcttgcggtcacgctccggctctttcaacgccttgatgacaagtgcagatgccgaaggaaccacctcaatctccg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40220022 |
ccattgtggttgatatgcttggtcttcttgcggtcacgctccggctctttcaacgccttgatgacaagtgcagatgccgaaggaaccacctcaatctccg |
40220121 |
T |
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| Q |
324 |
cctgacgattttgcacgatgagcttggctgtcaccct |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
40220122 |
cctgacgattttgcacgatgagcttggctgtcaccct |
40220158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 360
Target Start/End: Complemental strand, 21783603 - 21783303
Alignment:
| Q |
60 |
cattaatttcctgctgcaagtccttaggagccttgccatccacggtacatccaacagacacacacgtaccaagaacctcattaacagtgccagaaagttt |
159 |
Q |
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||||||| ||||||||||| ||||| ||| | || ||||| || ||||| |||||||| ||||| || || | || ||| || ||||| || | ||| | |
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| T |
21783603 |
cattaatctcctgctgcaaatcctttggatctttcccatcaacagtacacccaacagaaacacaggtccccaaaatctccttcacagttccggcaagctc |
21783504 |
T |
|
| Q |
160 |
cttcgccatcgacctcggactcataaccctagcaatgtcaatgacatcctcaagggatatgttcccattgtggttgatatgcttggtcttcttgcggtca |
259 |
Q |
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||||||||||||||||| |||||| | | ||||| ||||| ||||| ||||| || || |||||||| || ||||| | ||| ||||||||||| || |
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| T |
21783503 |
tttcgccatcgacctcggcttcataatctttgcaatctcaataacatcatcaagagagatattcccattatgcttgatgttcttagtcttcttgcgatcc |
21783404 |
T |
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| Q |
260 |
cgctccggctctttcaacgccttgatgacaagtgcagatgccgaaggaaccacctcaatctccgcctgacgattttgcacgatgagcttggctgtcaccc |
359 |
Q |
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| || || || ||||| |||||||| || || |||| || || ||||| || | | || ||||||||||| || ||| |||||||| ||||||||| |
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| T |
21783403 |
ctttctggttccttcaaagccttgataaccagcgcagccgcagacggaacaacagcgaccttagcctgacgattctgaacggtgagcttgactgtcaccc |
21783304 |
T |
|
| Q |
360 |
t |
360 |
Q |
| |
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| |
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|
| T |
21783303 |
t |
21783303 |
T |
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