View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_19 (Length: 360)
Name: NF16131_low_19
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 35 - 358
Target Start/End: Original strand, 4652322 - 4652655
Alignment:
| Q |
35 |
attgtcgattccaacaaaaatgccaaaaggcatattataagtatgtgccttgtaagtagtct-----gcaacatcatctccattacgttggtacaattca |
129 |
Q |
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| T |
4652322 |
attgtcgattccaacaaaaatgccaaaaggcatattataagtatgtaccttgtaaatagtctcaaatgcaacatcatctccattacgttggtacaattca |
4652421 |
T |
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| Q |
130 |
aaacaat-----gatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaa |
224 |
Q |
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| T |
4652422 |
aaacaatataatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtaaatacaaattggaagcatgagttttcatccttggaaaa |
4652521 |
T |
|
| Q |
225 |
cttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatct |
324 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4652522 |
cttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatcttttcgaagaaatcgaagatct |
4652621 |
T |
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| Q |
325 |
ccatgttttacatttttctcaagctccataacac |
358 |
Q |
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| T |
4652622 |
ccatgttttacgtttttctcaagctccataacac |
4652655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 358
Target Start/End: Original strand, 16149722 - 16150055
Alignment:
| Q |
30 |
ccgtgattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtgccttgtaagtagtct-----gcaacatcatctccattacgttggtaca |
124 |
Q |
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| T |
16149722 |
ccgtgattgtcgactccaacaaaaatgccaaaaggcatattataagtatttaccttgtaagtagtatcaaatgcaacagcatctccatactgttggtaca |
16149821 |
T |
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| Q |
125 |
attcaaaacaatgatgtggagaccaaaatatattttctagtcttttttctttatcaacagtgaatgcaaattggaagcatgagttttcatccttggaaaa |
224 |
Q |
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| T |
16149822 |
attcaaaacaatgaggtggagaccaaaatatattttctagtcttttttctttatcaaccgtaaattcaaattggaagcatgagttttcttccttggataa |
16149921 |
T |
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| Q |
225 |
cttacaaagtcgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattgtgaatatcttttcgaagaaatcgaagatct |
324 |
Q |
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| T |
16149922 |
cttacaaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctttctcaagaaatcgaagatct |
16150021 |
T |
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| Q |
325 |
ccatgttttacatttttctcaagctccataacac |
358 |
Q |
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| T |
16150022 |
ccatgttttacatttttctcaagctccataacac |
16150055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 23302337 - 23302273
Alignment:
| Q |
30 |
ccgtgattgtcgattccaacaaaaatgccaaaaggcatattataagtatgtgccttgtaagtagt |
94 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
23302337 |
ccgtgattgtcgattacaacaaagatgccaaaaggcatattataagtatttaccttgtaagtagt |
23302273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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