View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_20 (Length: 339)
Name: NF16131_low_20
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 9299351 - 9299660
Alignment:
| Q |
18 |
tcagaagctactctcaagtgtacgaagcacaaaatatgacatcatgtccaatttatgttgctgattcggatagcgaaagaatcattgaatctgatcttgt |
117 |
Q |
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| T |
9299351 |
tcagaagctacaatcaagtgtacgaagcacaaaatatgacatcatgtccaatttatgttgcttattcggatagcgatagtatcattgaatctgatcttgt |
9299450 |
T |
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| Q |
118 |
atactgcatcaaactgtttgatcgcgtttcnnnnnnncacgcatcttccattcaatcaaacatactctcattgaaatggtatggaacaaattttgactta |
217 |
Q |
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| T |
9299451 |
atactgcatcaaactgtttgatcgcgttgctttatttcccgcatcttccattcaatcaaacatactctcattgaaatggtatggaacaaattttgactta |
9299550 |
T |
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| Q |
218 |
ggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattattttatcctctgcaggtgacacaactttgctcatgtcatttcatttccatt |
317 |
Q |
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| T |
9299551 |
ggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattattttatcctctgcaggtgacacaactttgctcatgtcatttcatttccatt |
9299650 |
T |
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| Q |
318 |
ttcgtatatt |
327 |
Q |
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| T |
9299651 |
ttcgtatatt |
9299660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 281
Target Start/End: Complemental strand, 9258326 - 9258096
Alignment:
| Q |
51 |
atatgacatcatgtccaatttatgttgctgattcggatagcgaaagaatcattgaatctgatcttgtatactgcatcaaactgtttgatcgcgtttcnnn |
150 |
Q |
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| T |
9258326 |
atatgatatcttgtccaatttatgtcgccgattcagaccttgaaaatatcgttgaatctgacttagtatactgcatcaaattgtttgatcacgtttcctc |
9258227 |
T |
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| Q |
151 |
nnnncacgcatcttccattcaatcaaacatactctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaa |
250 |
Q |
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| T |
9258226 |
atttgatgcatctactattcaatacaaccgtctctcgttgacatggtcgggaacaaattttgacataggatgcttgaaatgtgaacataaatcgaagaag |
9258127 |
T |
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| Q |
251 |
aggattgcattcattattttatcctctgcag |
281 |
Q |
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| T |
9258126 |
aagattacattcgttattttatcctctgcag |
9258096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 9467418 - 9467363
Alignment:
| Q |
182 |
ctctcattgaaatggtatggaacaaattttgacttaggatgcttgaaatgtgaaca |
237 |
Q |
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| T |
9467418 |
ctcttattgacatggtcaggaacaaattttgacataggatgcttgaaatgtaaaca |
9467363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 285
Target Start/End: Original strand, 9170928 - 9171020
Alignment:
| Q |
193 |
atggtatggaacaaattttgacttaggatgcttgaaatgtgaacacaaagcaatgaaaaggattgcattcattattttatcctctgcaggtga |
285 |
Q |
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| T |
9170928 |
atggtctggaacaaattttgacataagatgcttgaaatgtgagaacaaaacaaagaagaggataacactcattactttaacctcagcaggtga |
9171020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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