View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_3 (Length: 596)
Name: NF16131_low_3
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 52 - 581
Target Start/End: Original strand, 49765701 - 49766229
Alignment:
| Q |
52 |
agaccagtagtaaattaattaacttgacactaattaatgtgtataataaaccaaatgttaaatctcctttattctttaccaaccttgttctgtaatcaat |
151 |
Q |
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| T |
49765701 |
agaccagtagtaa-ttaattaacttgacactaattaatgtgtataataaaccaaatgttaaatctcctttattctttaccaaccttgttctgtaatcaat |
49765799 |
T |
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| Q |
152 |
catcctctagcagaaagcaaagatggcatagcagataaatttggtgtagcattcttattattatcattagcatctctaataatatctcttctattattct |
251 |
Q |
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| T |
49765800 |
catcctctagcagaaagcaaagatggcatagcagataaatttggtgtagcattcttattattatcattagcatctctaataatatctcttctattattct |
49765899 |
T |
|
| Q |
252 |
gatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggttttgagaaactgtaac |
351 |
Q |
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| T |
49765900 |
gatgattctctttagaagatcctttgctactaaaagctctcataggactagcgaaagcccaaccccaactctttccaccacggttttgagaaactgtaac |
49765999 |
T |
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| Q |
352 |
agaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatgaagatgatgtcatc |
451 |
Q |
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| T |
49766000 |
agaaccttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatgaagatgatgtcatc |
49766099 |
T |
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| Q |
452 |
atgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacggttcacagaagcaa |
551 |
Q |
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| T |
49766100 |
atgaaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacggttcacagaagcaa |
49766199 |
T |
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| Q |
552 |
taccattagaattagcaactactccctttg |
581 |
Q |
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| T |
49766200 |
taccattagaactagcaactactccctttg |
49766229 |
T |
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