View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_30 (Length: 257)
Name: NF16131_low_30
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 27976500 - 27976720
Alignment:
| Q |
14 |
agagaaatgaagaatgctcttgtgacaatggacaaagagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccataca |
113 |
Q |
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| T |
27976500 |
agagaaatgaagaatgctcttgtgacaagggacaaagagatacaatttttaaatcagaagataaacggtccagacacaaatccagacgaaagtccataca |
27976599 |
T |
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| Q |
114 |
caacaaccacataatacaaatatacaccacatgaaggactttttagaaaatcaggtcaaggatccaacatgcaggaggatactgatacttcatctctaaa |
213 |
Q |
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| T |
27976600 |
caacaaccacagaatacaaatatacaccacatgaagcactttttagaaaatcaggtcaaggatccaacatgc---aggatactgatacttcatctctaaa |
27976696 |
T |
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| Q |
214 |
catcgacaacaattctatcagaac |
237 |
Q |
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|||||||||||||||||||||||| |
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| T |
27976697 |
catcgacaacaattctatcagaac |
27976720 |
T |
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