View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_32 (Length: 244)
Name: NF16131_low_32
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 35105174 - 35105297
Alignment:
| Q |
20 |
tcacacttcctcgcaccaactatgctcgtcctcgttgttttcgtgtcttctctcaatccaacacagaaacagtgcagataataagaaagtgttccccttt |
119 |
Q |
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| T |
35105174 |
tcacacttcctcgcaccaactatgctcgtcctcgttgttttcgtgtcttctctcaatccaacacagaaacagtgcagataataagaaagtgttccccttt |
35105273 |
T |
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| Q |
120 |
cctagaaagttcaatgcttgttgg |
143 |
Q |
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| T |
35105274 |
cctagaaagttcaatgcttgttgg |
35105297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 7004487 - 7004442
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcatattg |
230 |
Q |
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| T |
7004487 |
ccgcatagagttcatcagagatgagtcccattccatgagcatattg |
7004442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 7053097 - 7053051
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcatattga |
231 |
Q |
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| T |
7053097 |
ccgcatacagttcatcagagatgagtcccattccatgagcatattga |
7053051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 7020408 - 7020367
Alignment:
| Q |
189 |
atagagttcatcagagatgagtcccattccatgagcatattg |
230 |
Q |
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| T |
7020408 |
atagagttcatcagagatgagtcccattccatgagcatattg |
7020367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 7039731 - 7039688
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcatat |
228 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7039731 |
ccgcatagagttcatccgagatgagtcccattccatgagcatat |
7039688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 7027325 - 7027283
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcata |
227 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7027325 |
ccgcataaagttcatcagagatgagtcccattccatgagcata |
7027283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 7047113 - 7047071
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcata |
227 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7047113 |
ccgcataaagttcatcagagatgagtcccattccatgagcata |
7047071 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 7014036 - 7013993
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgagcatat |
228 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
7014036 |
ccgcatagagttcatcagaaatgagccccattccatgagcatat |
7013993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 6994608 - 6994570
Alignment:
| Q |
185 |
ccgcatagagttcatcagagatgagtcccattccatgag |
223 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| |
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| T |
6994608 |
ccgcataaagttcatcagaaatgagtcccattccatgag |
6994570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 5859232 - 5859195
Alignment:
| Q |
188 |
catagagttcatcagagatgagtcccattccatgagca |
225 |
Q |
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|||| ||||||||||| ||||||||||||||||||||| |
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| T |
5859232 |
catatagttcatcagatatgagtcccattccatgagca |
5859195 |
T |
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