View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_33 (Length: 241)
Name: NF16131_low_33
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 37808212 - 37807985
Alignment:
| Q |
1 |
tgatggcatggatattcttcattcaacttagcctgtaaagctcaaacatcatattcacataaaatattcgaccttaat-aaggaatatggatataactaa |
99 |
Q |
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| T |
37808212 |
tgatggaatggatattcttcattcaacttagcctgtaaacctcaaacatcatattcacaaaaaatattcgaccttaattaaggaatatggatataactaa |
37808113 |
T |
|
| Q |
100 |
ttaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttgg |
199 |
Q |
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| T |
37808112 |
ttaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttgg |
37808013 |
T |
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| Q |
200 |
atccataagcccattttggttcctatgt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37808012 |
atccataagcccattttggttcctatgt |
37807985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 37800756 - 37800634
Alignment:
| Q |
99 |
attaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgttttg |
198 |
Q |
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| T |
37800756 |
attaagctaacctgaatgataaaccatagagaaaaaaagcagctgcttcctatagcacatagaacgcccaatagtttattactaaagtctgcatgttgcg |
37800657 |
T |
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| Q |
199 |
gatccataagcccattttggttc |
221 |
Q |
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| T |
37800656 |
gctccatatgcccattttggttc |
37800634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 37781479 - 37781415
Alignment:
| Q |
104 |
gctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacaccca |
168 |
Q |
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|||||||||||| |||||||| ||||||||||||||| ||| |||| |||||||||| ||||| |
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| T |
37781479 |
gctaacctggataattaaccacaaagaaaaagagcaacaacttcctatggcacatggaataccca |
37781415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 37789917 - 37789794
Alignment:
| Q |
98 |
aattaagctaacctggatgattaaccataaagaaaaagagcaaacgcttgctattgcacatggaacacccactatattattactgaagtccctatgtttt |
197 |
Q |
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||||||||||||||| ||||| ||||| | |||||||||||| |||| |||| ||| || ||| |||| || |||||||||||||| ||||| | |
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| T |
37789917 |
aattaagctaacctgaatgataaaccaaagagaaaaagagcagctgcttcctatggcatatagaaatcccaatagtttattactgaagtctgcatgttgt |
37789818 |
T |
|
| Q |
198 |
ggatccataagcccattttggttc |
221 |
Q |
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| |||||| |||||||||||||| |
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| T |
37789817 |
agttccatatgcccattttggttc |
37789794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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