View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16131_low_34 (Length: 239)
Name: NF16131_low_34
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_34 |
 | |
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| [»] scaffold0259 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 32631553 - 32631340
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32631553 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
32631454 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32631453 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
32631354 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32631353 |
tgacagtgatgatg |
32631340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 32657445 - 32657232
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32657445 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
32657346 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32657345 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
32657246 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32657245 |
tgacagtgatgatg |
32657232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 32600440 - 32600227
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32600440 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaattctttttggaacaatccatccagtt |
32600341 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32600340 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
32600241 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32600240 |
tgacagtgatgatg |
32600227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 32582307 - 32582094
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32582307 |
tcacttcaatggacaggtgatgaggaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccgtccagtt |
32582208 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32582207 |
actttcaaaagaggacaagaaaagacatggtgagatattacttcaatgtatatcttattcaactaagaagctatcagaatcgagtgacttcggagactgt |
32582108 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
32582107 |
ttacagtgatgatg |
32582094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 21643 - 21430
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||| |
|
|
| T |
21643 |
tcacatcaatggacaggtgattaagaaaagagatttaaggttataatgagtctaaaaatcccctcccaaaataattctttttgcaacaatccatcaagtt |
21544 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| || |
|
|
| T |
21543 |
actttcaaaagagggcaagaaaagacatgctgagttattacttcaatgtatatcttattcaactaagaagctatcagaatcaagtgacttcaaggaccgt |
21444 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
21443 |
tgatagtgatgatg |
21430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 41172194 - 41171989
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
41172194 |
tcacttcgatggacagctgatgaagaaaagagatttaaggatgcaatgaggttaaaattcccctcccaaaacaagtctttttggaacaatccttccagat |
41172095 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
41172094 |
actttcgaaacaagacaagaaaagacatggtgagctattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgaccccgaagactgt |
41171995 |
T |
|
| Q |
215 |
tgacag |
220 |
Q |
| |
|
|||||| |
|
|
| T |
41171994 |
tgacag |
41171989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 41147313 - 41147100
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
41147313 |
tcacttcgatggacagctgatgaagaaaagagatttaaggatgcaataggtttaaaaatcccctctcaaaacaagtctttttggaacaatccatccagat |
41147214 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
||||| || || ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||| || | |||| |
|
|
| T |
41147213 |
gctttcgaaggaagacaagaaaagacttggtgagctattacttcaatgtatattttattcaactaagaagctatcagaatcgagtgactccgaatgctgt |
41147114 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41147113 |
tgacagtgatgatg |
41147100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 41164077 - 41163874
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
41164077 |
tcacttcgatggacagctgatgaagaaaagagatttaaggatgcgatgaggttaaaaatcccttcccaaaacaagtctttttggaacaatccatccatat |
41163978 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||| || || ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||| | || ||||||| |
|
|
| T |
41163977 |
actttcgaaggaagacaagaaaagacatggtgagctattgcttcaatgtatatcttattcaactaagaagctatcggaatcgagtgaatccgaagactgt |
41163878 |
T |
|
| Q |
215 |
tgac |
218 |
Q |
| |
|
|||| |
|
|
| T |
41163877 |
tgac |
41163874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 26404926 - 26404715
Alignment:
| Q |
15 |
tcacttcaatggacaggtgatgaagaaaagagatttaaggatataatgagtctaaaaatcccctcccaaaacaagtctttttggaacaatccatccagtt |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||| |||| |||||| | |||||| |||||||| || | |
|
|
| T |
26404926 |
tcacttcaatggacatctgatgaagaaaagagatttaaggatgcaatgaagttaaaaattccctctcaaagcaagtcatattggaaaaatccatctagat |
26404827 |
T |
|
| Q |
115 |
actttcaaaagaggacaagaaaagacatggtgagttattacttcaatgtatatcttattcaactaagaagttatcagaatcgagtgacttcggagactgt |
214 |
Q |
| |
|
|||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||| || | ||||| |
|
|
| T |
26404826 |
gctttcaaaggaatgcaagaaaagac--ggtgagctattacttcaatgtatatcttattcaactaagaatctatcaaaatcgagtgactccgaacactgt |
26404729 |
T |
|
| Q |
215 |
tgacagtgatgatg |
228 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
26404728 |
tgacaatgacgatg |
26404715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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