View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16131_low_37 (Length: 227)

Name: NF16131_low_37
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16131_low_37
NF16131_low_37
[»] chr2 (3 HSPs)
chr2 (1-227)||(34485935-34486149)
chr2 (48-165)||(16114225-16114342)
chr2 (51-215)||(9011369-9011532)
[»] chr5 (2 HSPs)
chr5 (13-140)||(16999113-16999240)
chr5 (13-70)||(12318507-12318564)
[»] chr3 (3 HSPs)
chr3 (48-218)||(1319052-1319222)
chr3 (63-216)||(4293304-4293456)
chr3 (58-139)||(28715147-28715228)
[»] chr6 (3 HSPs)
chr6 (30-140)||(11966512-11966622)
chr6 (51-137)||(21098561-21098647)
chr6 (51-120)||(20743061-20743130)
[»] chr4 (1 HSPs)
chr4 (51-138)||(36083560-36083647)
[»] chr1 (2 HSPs)
chr1 (51-138)||(9923847-9923934)
chr1 (51-138)||(11910136-11910223)
[»] chr7 (1 HSPs)
chr7 (51-221)||(26641086-26641255)
[»] scaffold0127 (2 HSPs)
scaffold0127 (101-165)||(28527-28591)
scaffold0127 (101-165)||(35433-35497)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34485935 - 34486149
Alignment:
Q  1 accctttaaatactgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttc 100  Q
    |||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  34485935 acccttaaaatactgcccaaaaatttcatgcagattatcgtagaagtatatccgcaggtaa------------ttctaaaatccttgggaaacagttttc 34486022  T
Q  101 cacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggac 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34486023 cacgaaggtattagctgggaaactgaatccttggcaaattccacatgaaaaggctttcctgcggacatttccctgaaatccgtaggtaattccgcaggac 34486122  T
Q  201 aatcgaaagtttctagtaatgtgtttt 227  Q
    |||||||||||||||||||||||||||    
T  34486123 aatcgaaagtttctagtaatgtgtttt 34486149  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 165
Target Start/End: Original strand, 16114225 - 16114342
Alignment:
Q  48 atatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatg 147  Q
    ||||||||| ||| ||||| ||| ||| ||||||||||| ||||||||||  |||| ||||||||||||||||| |||||||||||  ||||  | || |    
T  16114225 atatccgcatgtatgtttcttgcggttcctaaaatccttaggaaacagttacccacaaaggtattagctgggaacctgaatccttgataaatgccgcagg 16114324  T
Q  148 aaaaggctttcctgcgga 165  Q
    |||| |||||||||||||    
T  16114325 aaaaagctttcctgcgga 16114342  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 215
Target Start/End: Original strand, 9011369 - 9011532
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaa 150  Q
    |||||||| | ||||||||||||||||||||||||  ||||| | ||  |||||||||||||| ||||||| || || |||||||||| |   || | ||    
T  9011369 tccgcaggaatgtttcctgcagtttctaaaatcctcaggaaataattacccacgaaggtattatctgggaacctaaagccttggcaaaatctgca-ggaa 9011467  T
Q  151 aggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttcta 215  Q
    ||| ||||||||||| || |   ||| ||||  |||||||||||||||| ||| |||||||||||    
T  9011468 aggatttcctgcggaaatgttaacgatatccccaggtaattccgcaggaaaattgaaagtttcta 9011532  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 16999240 - 16999113
Alignment:
Q  13 ctgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtatt 112  Q
    |||||||||| |||| ||| |||||| || | |||||||||| || || ||||||||| ||||||| |||||| ||||||   || ||||||||||||||    
T  16999240 ctgcccagaagtttcctgcagattattgtgggagtatatccggagttacgtttcctgcggtttctataatcctcgggaaaacattatccacgaaggtatt 16999141  T
Q  113 agctgggaaactgaatccttggcaaatt 140  Q
    |||| |||| |||||||| |||||||||    
T  16999140 agctaggaacctgaatccctggcaaatt 16999113  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 12318564 - 12318507
Alignment:
Q  13 ctgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgc 70  Q
    |||||||||| |||| | |||||||||  || ||||||||||||| ||||||||||||    
T  12318564 ctgcccagaagtttcctacggattatcaaaggagtatatccgcagttaagtttcctgc 12318507  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 1319052 - 1319222
Alignment:
Q  48 atatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatg 147  Q
    ||||||||||| |  |||||||| ||| ||||||||||  ||||||| ||  |||||||||||||||||||||| ||||||||||| |||||| | || |    
T  1319052 atatccgcaggaacttttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattagctgggaacctgaatccttgacaaattccgcagg 1319151  T
Q  148 aaaaggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctagta 218  Q
    |||   |||||||||||| || | ||   | |||  |||||||||||||||| | |||| |||||||||||    
T  1319152 aaataactttcctgcggaaatatacctatattccacaggtaattccgcaggaaattcgagagtttctagta 1319222  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 4293456 - 4293304
Alignment:
Q  63 tttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgc 162  Q
    |||||||||||||||||||||||  ||||||| ||  |||| |||||  || ||||||| || | ||||| ||||| | | || |||| || ||||||||    
T  4293456 tttcctgcagtttctaaaatcctaaggaaacaattacccacaaaggttatacctgggaacctaagtccttagcaaaatccgcaggaaatgg-tttcctgc 4293358  T
Q  163 ggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctag 216  Q
    ||| ||||| || || |||| || | ||||||||||| |||||| |||||||||    
T  4293357 ggaaatttcaccaaactccgcagatgattccgcaggaaaatcgagagtttctag 4293304  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 28715228 - 28715147
Alignment:
Q  58 gtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaat 139  Q
    |||| |||||||| ||||||||||||||  ||||||| ||  || |||||||||||| |||||| || |||| ||| |||||    
T  28715228 gtaactttcctgcggtttctaaaatcctaaggaaacaattacccgcgaaggtattagttgggaacctaaatcgttgacaaat 28715147  T

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Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 11966512 - 11966622
Alignment:
Q  30 gcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatc 129  Q
    |||||||||| ||  |||||||||||||  ||||||||||| ||||| ||||| ||   |||||||||  |||||||||||||||||||||| || ||||    
T  11966512 gcggattatcatacgagtatatccgcagtcaagtttcctgcggtttcgaaaattctcacgaaacagttacccacgaaggtattagctgggaacctaaatc 11966611  T
Q  130 cttggcaaatt 140  Q
    ||| |||||||    
T  11966612 cttagcaaatt 11966622  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 21098647 - 21098561
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaa 137  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||| ||  ||||||||||  || | ||||| || ||||||||||||    
T  21098647 tccgcaggaaagtttcctgcggtttctaaaatcctatggaaacaattacccacgaaggttataccagggaacctaaatccttggcaa 21098561  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 20743130 - 20743061
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctggga 120  Q
    |||||||| || |||||||| ||||||||||||||  |||||||  | ||||||||||||||| ||||||    
T  20743130 tccgcaggaaattttcctgcggtttctaaaatcctcaggaaacaactatccacgaaggtattacctggga 20743061  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 36083647 - 36083560
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 138  Q
    ||||||||| |||||||||| ||| ||||||||||  ||||||| ||  |||||||||||||| ||||||| || |||||||||||||    
T  36083647 tccgcaggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaa 36083560  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 9923934 - 9923847
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 138  Q
    ||||||||||| |||||||| ||| ||||||||||  ||||||| ||  |||||||||||||| ||||||| || |||||||||||||    
T  9923934 tccgcaggtaaatttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaa 9923847  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 11910223 - 11910136
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 138  Q
    ||||||||| |||||||||  ||| ||||||||||  ||||||| ||  |||||||||||||| |||| || || |||| ||||||||    
T  11910223 tccgcaggttagtttcctggggttcctaaaatcctcaggaaacaattagccacgaaggtattacctggtaaccttaatcgttggcaaa 11910136  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 26641086 - 26641255
Alignment:
Q  51 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaa 150  Q
    ||||||||||  |||||||| ||||||||||||||  |||||||  ||||||| ||||||||| |||||||| | ||||||||  ||| | | |  ||||    
T  26641086 tccgcaggtacatttcctgcggtttctaaaatcctcaggaaaca-atttccactaaggtattacctgggaaaattaatccttgataaaatccgctggaaa 26641184  T
Q  151 aggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctagtaatg 221  Q
      | ||||||||||| |||||     |||||||||| ||||||| |||| |||||  ||||||||||||||    
T  26641185 caggtttcctgcggaaatttcagtataatccgtaggaaattccggaggaaaatcgggagtttctagtaatg 26641255  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 28527 - 28591
Alignment:
Q  101 cacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcgga 165  Q
    ||||||||||||| ||||||| |||||||||||| ||| | | |||||||  | |||||||||||    
T  28527 cacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcgga 28591  T

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Target: scaffold0127; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 35433 - 35497
Alignment:
Q  101 cacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcgga 165  Q
    ||||||||||||| ||||||| |||||||||||| ||| | | |||||||  | |||||||||||    
T  35433 cacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcgga 35497  T

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