View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_39 (Length: 213)
Name: NF16131_low_39
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 45477942 - 45478118
Alignment:
| Q |
20 |
atgccctgctaccctaccactttacccctgcctactattttttgacaggtccccctattctccttagacagcaaaaatagcgaaaaatttattgttctcc |
119 |
Q |
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| T |
45477942 |
atgccctgctaccctaccactttacccctgcctactattttttgacaggtccccctattctccttagacagcaaaaatagcgaaaaatttattgttctcc |
45478041 |
T |
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| Q |
120 |
cctccacttttatacgtgtagggttagtatgcggtccannnnnnnacaaatgttttacaaaattaagtagaagttctt |
197 |
Q |
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| T |
45478042 |
cctccacttttatacgtgtagggttagtatggggtcca-ttttttacaaatgttttacaaaattaagtagaagttctt |
45478118 |
T |
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