View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_5 (Length: 520)
Name: NF16131_low_5
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 509
Target Start/End: Complemental strand, 30892229 - 30891738
Alignment:
| Q |
18 |
gatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcctcgaacacttgttggaaatatttcagcagatatgatgtttggtatcaca |
117 |
Q |
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| T |
30892229 |
gatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcctcgaacacttgttggaaatatttcagcagatatgatgtttggtatcaca |
30892130 |
T |
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| Q |
118 |
ccaaaacccatgcagaatatgctttcatatgtcacaacacatattgctgttattgctgcattgaggattgaacttaggtgaaataagtctctgagtacta |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30892129 |
ccaaaacccatgcagaatatgctttcatatgttacaacacatattgctgttattgctgcattgaggattgaacttaggtgaaataagtctttgagtacta |
30892030 |
T |
|
| Q |
218 |
gtatcatgagagaaagtatcagaattggaattgtgtagagcaatattgacctgtgccataagaaataaacaatgtcatggtcattatacatatattctaa |
317 |
Q |
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| T |
30892029 |
gtatcatgagagaaagtatcagaattggaattgtgtagagcattattgacctgtgccataagaaataaacaatgtcatggtcattatacatatattctaa |
30891930 |
T |
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| Q |
318 |
tccctcgagtcggataggaccacaaagggtggtaaagttctccgtcaagagatatagactagtttgaattctgagaaattaaaagtatcaatttgatctt |
417 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30891929 |
tccctcgagtcggataggaccacagagggtggtaaagttctccgtcaagagatatagactagtttgaattctgagaaatgaaaagtatcaatttgatctt |
30891830 |
T |
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| Q |
418 |
aaaaaatttaatgtcgcttaaaatagtcttgcatacagactaatatccttaaaaattcctagaagtgactaagaataaattgtacttttcat |
509 |
Q |
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| T |
30891829 |
aaaaaatttcatgtcgcttaaaatagtcttgcatacagactaatatccttaaaaattcctagaagtgactaagaatgaatcgtacttttcat |
30891738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 9950236 - 9950309
Alignment:
| Q |
70 |
cgaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttc |
143 |
Q |
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|||||||| ||||| || ||||| ||| |||||||||| || || ||||||| |||||||||||| | |||||| |
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| T |
9950236 |
cgaacactggttgggaagatttctgcacatatgatgttgggaataacaccaagacccatgcagaagacgctttc |
9950309 |
T |
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