View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16131_low_7 (Length: 447)
Name: NF16131_low_7
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16131_low_7 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 48592071 - 48592495
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48592071 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48592170 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48592171 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48592270 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48592271 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48592370 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
48592371 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48592470 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatat |
431 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48592471 |
ataaagctttccaacaacataatat |
48592495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 48601766 - 48602190
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48601766 |
tggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
48601865 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48601866 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
48601965 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601966 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
48602065 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
48602066 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggcagaagaaagtgtgaacctcacacaagctttg |
48602165 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatat |
431 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48602166 |
ataaagctttccaacaacataatat |
48602190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 23232261 - 23231837
Alignment:
| Q |
7 |
tggacatcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaa |
106 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||||||| ||||| ||| ||||||| || | |||||| ||| | |||||||||||||||||||| ||| | |
|
|
| T |
23232261 |
tggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttatatcccttcgacttggctctgctcga |
23232162 |
T |
|
| Q |
107 |
tttatcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23232161 |
tttatagttgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttg |
23232062 |
T |
|
| Q |
207 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
23232061 |
cctatgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaaccgaaccattgg |
23231962 |
T |
|
| Q |
307 |
acaatttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttg |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
23231961 |
gcaattcctaccgattcgaacccaagaactcgatgaattcattcaaacattgacaaataaatctaaggccagagaaagtttgaacctcacacaagctttg |
23231862 |
T |
|
| Q |
407 |
ataaagctttccaacaacataatat |
431 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
23231861 |
ataaagctttccaacaacataatat |
23231837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 11 - 431
Target Start/End: Complemental strand, 23224924 - 23224504
Alignment:
| Q |
11 |
catcatcatctcctcaaaccactcattcatcaggcctttcgccacctctccgatcaatatggccctttaatatcccttcgacttggctcctctcaattta |
110 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||| ||||||||| ||||||| |||| |||||| || | ||||||||||||||||| || || ||||| |
|
|
| T |
23224924 |
catcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccccttatatcccttcgacttggttctgttccattta |
23224825 |
T |
|
| Q |
111 |
tcattgttaacactccatcactcgccaaagagtttctcaagacacatgagctcacttattctcaccgtaaaatgagcatagccatcaacgtagttgccta |
210 |
Q |
| |
|
|| |||||| | ||||||||||| |||||||||||||| ||| | ||||| ||||||| ||||||||||| ||| ||||||||| ||||| ||| |
|
|
| T |
23224824 |
tcgttgttagttccccatcactcgcaaaagagtttctcaaaacaaacgagcttgtttattcttcccgtaaaatgaacattgccatcaacacagttgtcta |
23224725 |
T |
|
| Q |
211 |
tgatgatgcaacttttgctttcgctccttatgggacttattggaaatttattaaaaagctcagcaccactgagctcttgggtaatcgaaccatggcacaa |
310 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||| | ||||||||||| || |||||||| || ||| ||||||||| || || || || || | |||| |
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|
| T |
23224724 |
cgatgatgctacttttgcttttgccccttatggggcatattggaaattcatcaaaaagcttagtacctttgagctcttaggcaaccggactattggacaa |
23224625 |
T |
|
| Q |
311 |
tttctaccgattcgaacccaagaactccatgaattcattcaaactttggcaaataagtctaaggtggaagaaagtgtgaacctcacacaagctttgataa |
410 |
Q |
| |
|
|| |||| |||||||| | ||||||| | || |||||||||||||||| |||||| || ||||| |||||||| ||||||||||| ||||||||| | | |
|
|
| T |
23224624 |
ttcttaccaattcgaactcgagaactcaacgagttcattcaaactttggaaaataaatccaaggttgaagaaagcgtgaacctcactcaagctttgttga |
23224525 |
T |
|
| Q |
411 |
agctttccaacaacataatat |
431 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23224524 |
agctttccaacaacataatat |
23224504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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