View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16131_low_9 (Length: 429)

Name: NF16131_low_9
Description: NF16131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16131_low_9
NF16131_low_9
[»] chr1 (3 HSPs)
chr1 (15-416)||(49166965-49167362)
chr1 (178-247)||(4868439-4868507)
chr1 (26-74)||(7105800-7105848)
[»] chr4 (5 HSPs)
chr4 (17-85)||(1426524-1426592)
chr4 (181-292)||(2996567-2996678)
chr4 (176-248)||(6987701-6987773)
chr4 (178-229)||(15620358-15620408)
chr4 (181-229)||(1408285-1408333)
[»] chr8 (2 HSPs)
chr8 (300-332)||(31315537-31315569)
chr8 (303-350)||(40356806-40356854)
[»] chr2 (2 HSPs)
chr2 (178-226)||(1318296-1318344)
chr2 (177-221)||(27699490-27699534)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 49167362 - 49166965
Alignment:
Q  15 atccataagttacataaggctcaaccttgtgcaacatgttcattgttgctttgttaacttcaaggaaaacaacatgttcattttcttaaagtattactgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49167362 atccataagttacataaggctcaaccttgtgcaacatgttcattgttgctttgttaacttcaaggaaaacaacatgttcattttcttaaagtattactgt 49167263  T
Q  115 tatcgacctgtcagtgccgcatccatccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49167262 tatcgacctgtcagtgccgcatccatccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatctt 49167163  T
Q  215 ataacatgtccataatctttttacaacttatttcgccaagttcttcaagacatcttatggaaacaacttatgacttatnnnnnnntagtttgactttatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||       |||||||||||||||    
T  49167162 ataacatgtccataatctttttacaacttatttcgccaagttcttcaagacatcttatggaaacaacatataacttat-----aatagtttgactttatt 49167068  T
Q  315 ttttcttttattat-aaaatagctaacagataagcacatgttagatgtcagtggacaaatgtatgaggctatgagcagacttgacatctttacactttca 413  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49167067 ttttcttttattataaaaatagctaacagataagcacatgttagatgtcagtggacaaatgtatgaggctatgagcagacttgacatctttacactttca 49166968  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 4868507 - 4868439
Alignment:
Q  178 ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttattt 247  Q
    ||||||||||| ||||||||||||||||| ||| ||||| ||||||| ||||  | ||| ||||||||||    
T  4868507 ttgtgagactgtttgagagagtttatgaa-acaacttatgacatgtcaataagttgttttcaacttattt 4868439  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 7105800 - 7105848
Alignment:
Q  26 acataaggctcaaccttgtgcaacatgttcattgttgctttgttaactt 74  Q
    ||||||||||||||| |||| | ||||||||  ||||||||||||||||    
T  7105800 acataaggctcaaccctgtggagcatgttcacggttgctttgttaactt 7105848  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1426524 - 1426592
Alignment:
Q  17 ccataagttacataaggctcaaccttgtgcaacatgttcattgttgctttgttaacttcaaggaaaaca 85  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  1426524 ccataagtcacataaggctcaaccctgtgcaacatgttcattgttgctttgttaactttaaggaaaaca 1426592  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 292
Target Start/End: Complemental strand, 2996678 - 2996567
Alignment:
Q  181 tgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttcgccaagttcttcaagacatcttatggaaacaa 280  Q
    |||||||| ||||||||| ||||||| ||| ||||| |||||||||||| |||||| ||||||||||    | | ||| ||||| | |||||| ||||||    
T  2996678 tgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaa 2996579  T
Q  281 cttatgacttat 292  Q
    ||||| ||||||    
T  2996578 cttataacttat 2996567  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 6987701 - 6987773
Alignment:
Q  176 gtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttc 248  Q
    ||||||||||||| ||| ||||| ||||| | ||| ||||| |||||||||||| || ||| |||||||||||    
T  6987701 gtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttc 6987773  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 15620358 - 15620408
Alignment:
Q  178 ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataa 229  Q
    |||||||| ||||||||||||||||| || ||| ||||||||||||||||||    
T  15620358 ttgtgagattgattgagagagtttat-aaaacaacttataacatgtccataa 15620408  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 1408285 - 1408333
Alignment:
Q  181 tgagactgattgagagagtttatgaagacatcttataacatgtccataa 229  Q
    |||||||| |||||||| |||||||| ||| ||||| ||||||||||||    
T  1408285 tgagactgtttgagagaatttatgaaaacagcttattacatgtccataa 1408333  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 31315537 - 31315569
Alignment:
Q  300 tagtttgactttattttttcttttattataaaa 332  Q
    ||||||||||||||||| |||||||||||||||    
T  31315537 tagtttgactttattttatcttttattataaaa 31315569  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 40356854 - 40356806
Alignment:
Q  303 tttgactttattttttcttttattata-aaatagctaacagataagcac 350  Q
    |||||||||||||| |||||||||||| |||||||| | ||||||||||    
T  40356854 tttgactttattttatcttttattatataaatagcttatagataagcac 40356806  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 1318344 - 1318296
Alignment:
Q  178 ttgtgagactgattgagagagtttatgaagacatcttataacatgtcca 226  Q
    ||||||||||| ||| ||||| ||||||| ||||||||| |||||||||    
T  1318344 ttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtcca 1318296  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 27699490 - 27699534
Alignment:
Q  177 tttgtgagactgattgagagagtttatgaagacatcttataacat 221  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  27699490 tttgtgagactgtttgagagagtttatgaaaacaacttatgacat 27699534  T

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