View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16132_high_1 (Length: 651)
Name: NF16132_high_1
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 733045 - 732804
Alignment:
| Q |
13 |
aatatctaaactcccagtctgatgcatcctgttgacgatgtctttcccatagtacacacgtacga---------caatcgtcattcagatatatctgtac |
103 |
Q |
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| T |
733045 |
aatatctaaactcccagtctgatgcatcctgttgacgatgtctttcccatagtacacacgtaggaggtattggacaatcgtcattcagatatatctgtac |
732946 |
T |
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| Q |
104 |
gtaatataaaggtat--gattgttacacacaagcaacgacaacactaaatacaaattaaaaatcagatataagtttagatgcatgaaatgattgttgttc |
201 |
Q |
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| T |
732945 |
gtaatataaacgtatatgattgttacacacaagcaacgacaacactaaatacaaattaaaaatcagatataagtttagctgcatgaaatgattgttgttc |
732846 |
T |
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| Q |
202 |
acatatccaaggcacatgagtcgattaatgctttctgttggt |
243 |
Q |
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| T |
732845 |
acatatccaaggcacatgagtcgattaatgctttctgctggt |
732804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 421 - 590
Target Start/End: Complemental strand, 732629 - 732460
Alignment:
| Q |
421 |
aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact |
520 |
Q |
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| T |
732629 |
aagatttgatgatgtagagagcatttaggttggaattgttgacaggtgagccaacgaactttgcattgtgcacaaaataacctatgacaaacgggacact |
732530 |
T |
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| Q |
521 |
ctgtatgtatcacggtttcaaacctatcattgagcaaggaaactgaacaatcatagaatggacaattcac |
590 |
Q |
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| T |
732529 |
atgtacgtatcacggtttcaaacctatcattgagcaacgaaactgaacaatcatagaatggacaattcac |
732460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 732387 - 732343
Alignment:
| Q |
591 |
ctgcttgcatcatcgtgtcgagtttattaggatatagaatcgtac |
635 |
Q |
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| T |
732387 |
ctgcttgcatcatcgtgtcgagtttattagaatatagaatcgtac |
732343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 4109328 - 4109268
Alignment:
| Q |
247 |
cacaatgaccatcaccagcgatatcaatgacttcttcaataaattgatgcatgaacagagg |
307 |
Q |
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| T |
4109328 |
cacaatgaccatcaccttcgacaccaacgacattttgaataaattgatgcatgaacagagg |
4109268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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