View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16132_high_2 (Length: 630)
Name: NF16132_high_2
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 130 - 618
Target Start/End: Complemental strand, 29727513 - 29727023
Alignment:
| Q |
130 |
gcaaagttaattaagggaattatgctgtgggtctgcttgcacatgcccacagccagccgtgttgaaccacaagtcttctaattttctggcatctataggt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727513 |
gcaaagttaattaagggaattatgctgtgggtctgcttgcacatgcccacagccagccgtgttgaaccacaagtcttctaattttctggcatctataggt |
29727414 |
T |
|
| Q |
230 |
tgcatagtacttcaacatgctacaaggcaaagaacaaaagatttttgatgtgatggtttgcaaggagaaagacaaaatatgtatctatcacctaattaga |
329 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29727413 |
tgcatattacttcaacatgctacaaggcaaagaacgaaagatttttgatgtgatggtttgcaaggagaaagacaaaatatgcatccatcacctaattaga |
29727314 |
T |
|
| Q |
330 |
gccattcattcccttttgtaatttctacggtacagcacaaccaatcaagtttcaacaacacattttttaattataaataagacatcctactaaactacat |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727313 |
gccattcattcccttttgtaatttctacggtacagcacaaccaatcaagtttcaacaacacattttttaattataaataagacatcctactaaactacat |
29727214 |
T |
|
| Q |
430 |
--tactacgtaataacaataaccaccttccatttcccacattagccaaatcgttatcactaaccatattcacattatcactaacatgttttccttaacac |
527 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29727213 |
tatactacgtaaaaacaataaccaccttccatttcccacattagccaaatcgttatccctaaccatattcacattattactaacatgttttccttaacac |
29727114 |
T |
|
| Q |
528 |
ttcccatgccactactactaaagacagctactactactaaccatgttcatcgggggatcactcagatacaaactcattctcgatattcttc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727113 |
ttcccatgccactactactaaagacagctattactactaaccatgttcatcgggggatcactcagatacaaactcattctcgatattcttc |
29727023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 24683319 - 24683428
Alignment:
| Q |
19 |
ctctggggtacttatttatgcttaactcaaggagtttcgactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24683319 |
ctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatccc |
24683418 |
T |
|
| Q |
119 |
ctctttgtat |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
24683419 |
ctctttgtat |
24683428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 16060577 - 16060468
Alignment:
| Q |
19 |
ctctggggtacttatttatgcttaactcaaggagtttcgactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatccc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16060577 |
ctctggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatccc |
16060478 |
T |
|
| Q |
119 |
ctctttgtat |
128 |
Q |
| |
|
|||||||||| |
|
|
| T |
16060477 |
ctctttgtat |
16060468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University