View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16132_high_6 (Length: 354)

Name: NF16132_high_6
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16132_high_6
NF16132_high_6
[»] chr6 (26 HSPs)
chr6 (18-354)||(27604413-27604749)
chr6 (18-354)||(26802585-26802918)
chr6 (32-348)||(27592737-27593050)
chr6 (18-307)||(27677369-27677658)
chr6 (18-348)||(27679089-27679416)
chr6 (18-307)||(27706157-27706446)
chr6 (18-222)||(27718219-27718423)
chr6 (18-259)||(27698297-27698538)
chr6 (18-222)||(27610842-27611046)
chr6 (19-207)||(27427461-27427649)
chr6 (22-213)||(28786425-28786616)
chr6 (22-213)||(28792546-28792737)
chr6 (18-204)||(26884308-26884494)
chr6 (22-213)||(28781286-28781477)
chr6 (17-213)||(26861755-26861951)
chr6 (32-279)||(27530983-27531227)
chr6 (18-111)||(27724796-27724889)
chr6 (16-111)||(31284429-31284524)
chr6 (32-99)||(28227107-28227174)
chr6 (151-274)||(26646755-26646875)
chr6 (151-274)||(26752723-26752843)
chr6 (32-173)||(28234720-28234861)
chr6 (51-111)||(28325657-28325717)
chr6 (32-99)||(28181271-28181338)
chr6 (19-77)||(29826171-29826229)
chr6 (40-77)||(26811674-26811711)
[»] scaffold0349 (2 HSPs)
scaffold0349 (18-222)||(3260-3465)
scaffold0349 (18-222)||(14196-14400)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-207)||(59714-59902)
[»] chr4 (5 HSPs)
chr4 (19-207)||(18073906-18074094)
chr4 (32-111)||(5090905-5090984)
chr4 (39-86)||(17989019-17989065)
chr4 (149-213)||(18655313-18655377)
chr4 (149-213)||(18723921-18723985)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-204)||(4529-4715)
scaffold0277 (22-204)||(13490-13672)
[»] scaffold0419 (1 HSPs)
scaffold0419 (22-204)||(7672-7854)
[»] scaffold0038 (3 HSPs)
scaffold0038 (32-99)||(27605-27672)
scaffold0038 (32-173)||(34882-35023)
scaffold0038 (51-111)||(116972-117032)
[»] chr1 (1 HSPs)
chr1 (18-89)||(28127639-28127710)


Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 27604749 - 27604413
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||          
T  27604749 aaagggtcgcgtcgttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtcaagcattggctgagcataaaaaa 27604650  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27604649 aggtttcaaaatgatgaggataacataaagaggttgcagcgatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 27604550  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaatgagatcaaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27604549 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattacccaataatctcatattcaaggttaaatgagatcaaa 27604450  T
Q  318 tacctttttcatttacgtttttaaacaagtattagtt 354  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27604449 taccttttttatttacgtttttaaacaagtattagtt 27604413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 26802585 - 26802918
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || | |||||| |||||||||||||||| ||| || ||||||| ||||||| | |||| || ||| |||||||||||||||||          
T  26802585 aaagggtcgcctcgtcttgcctattttctttggtgtggatcctactaatgtgcgccatcatacatgtagctatggtgaagcattggctgagcatgaaaaa 26802684  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     |||||||||||||| ||||||||||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  26802685 aggtttcaaaatgataaggataacatggagaggttggagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctc 26802784  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaatgagatcaaa 317  Q
    ||||| ||||  ||| ||||||||||||||||||||| |||||| ||| ||||| ||||||| ||| |||||||||| || ||||||||||| |   |||    
T  26802785 ggtacccaactttacttaaatcctatttttcccttttatattttatttcttcaacttcaatttcccaataatctcatcttaaaggttaaatggg---aaa 26802881  T
Q  318 tacctttttcatttacgtttttaaacaagtattagtt 354  Q
    ||||||| | || ||||||||||||||||||||||||    
T  26802882 tacctttcttatatacgtttttaaacaagtattagtt 26802918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 32 - 348
Target Start/End: Complemental strand, 27593050 - 27592737
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 131  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||       |||||||||||||    
T  27593050 ttttgcctgttttctttggtgtggatccttctcatgtgcgacatcataaaggtagttatggtgaagcattggctgagcatgaaaagaggtttcaaaatga 27592951  T
Q  132 tgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacacta 231  Q
    |  | | |||||  |||||||||||  ||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||    
T  27592950 tccgaaaaacatggagaggttgcagggatggaaagacgctctgagccaggctgctaacttgtccggctaccatgatagtcctcctgggtacccaacttta 27592851  T
Q  232 cataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaatgagatcaaatacctttttcattt 331  Q
    | ||||||||||||||||||||| |||||| ||| ||||| |||||||   | |||||||||| || ||||||||| | |   |||||||||||| || |    
T  27592850 cttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaaggg---aaataccttttttatat 27592754  T
Q  332 acgtttttaaacaagta 348  Q
    ||  |||||||||||||    
T  27592753 acagttttaaacaagta 27592737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 27677658 - 27677369
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || || ||||||||||||||| |||||||||| ||  |||||||||||| ||||||||||| ||| |||||||||||||||||          
T  27677658 aaagggtcgcctcgttctgcctgttttctttgctgtggaacctactattgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaag 27677559  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||  | | | |||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27677558 aggtttcaaaatgatccgaaaagcatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27677459  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaa 307  Q
    ||||| ||||  ||| ||||||||||||||||||||| |||||| ||| ||||| ||||||| | | |||||||||| || |||||||||    
T  27677458 ggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaaggttaaa 27677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 27679089 - 27679416
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || || |||||||||||||||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||          
T  27679089 aaagggtcgcctcgttctgcctgttttctttggtgtggaacctactgttgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaag 27679188  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||  | | |||||  ||||||||||   |||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27679189 aggtttcaaaatgatccgaaaaacatggagaggttgcaaggatggaaaaaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27679288  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaatgagatcaaa 317  Q
    ||||| ||||  ||| ||||||||||||||||||||| |||||| ||| ||||| |||||||   | |||||||||| || ||||||||| | |   |||    
T  27679289 ggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaattttacaataatctcatcttaaaggttaaaaggg---aaa 27679385  T
Q  318 tacctttttcatttacgtttttaaacaagta 348  Q
    ||||||||| || |||  |||||||||||||    
T  27679386 taccttttttatatacagttttaaacaagta 27679416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 27706446 - 27706157
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || || |||||||||| |||||||| |||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||          
T  27706446 aaagggtcgcctcgttctgcctgttttatttggtgtagaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaag 27706347  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27706346 aggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27706247  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtattttctttattcaatttcaattaccctataatctcatattcaaggttaaa 307  Q
    ||||| ||||  ||| ||||||||||||||||||||| |||||| ||| ||||| ||||||| | | |||||||||| || ||| |||||    
T  27706246 ggtacccaactttacttaaatcctatttttcccttttctattttatttcttcaacttcaatttcacaataatctcatcttaaagtttaaa 27706157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 27718423 - 27718219
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||          
T  27718423 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaag 27718324  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     |||||||||||||| || |||||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27718323 aggtttcaaaatgataagaataacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 27718224  T
Q  218 ggtac 222  Q
    |||||    
T  27718223 ggtac 27718219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 27698538 - 27698297
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||||| |||||||||||  || ||||| ||||||||||||||||||| || ||||||||||||||||||          
T  27698538 aaagggtcgcctcgttttgcctgttttcttcggtgtggaaccaactaatgtgagacatcataaaggtagttatggcaaagcattggctgagcatgaaaag 27698439  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||      
T  27698438 aggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctccca 27698339  T
Q  218 ggtactcaacactacataaatcctatttttcccttttgtatt 259  Q
    ||||| ||||  ||| |||||||||| |||||||||||||||    
T  27698338 ggtacccaactttacttaaatcctatatttcccttttgtatt 27698297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 27611046 - 27610842
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||          
T  27611046 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaaagtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaag 27610947  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     |||||||||||||| || |||||||  |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27610946 aggtttcaaaatgataagaataacatggagaggttgcagggatggaaagtggctctgagccaggctgcaaacttttccggctaccatgatagtcctcctg 27610847  T
Q  218 ggtac 222  Q
    |||||    
T  27610846 ggtac 27610842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 27427649 - 27427461
Alignment:
Q  19 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 118  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  27427649 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 27427550  T
Q  119 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 207  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  27427549 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 27427461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 28786425 - 28786616
Alignment:
Q  22 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 121  Q
    |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| ||||       |||    
T  28786425 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28786524  T
Q  122 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28786525 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28786616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 28792546 - 28792737
Alignment:
Q  22 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 121  Q
    |||||| || |||||||||||||||||||||| || ||| || ||||||||||||||| |||| |||| ||| |||||||||||| ||||       |||    
T  28792546 ggtcgcctcgttttgcctgttttctttggtgtcgatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctgggcatgaaaagaggt 28792645  T
Q  122 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28792646 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28792737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 26884308 - 26884494
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||  |||||||||| ||| || ||||||||||||||| ||||||||| ||| ||||||||||||| |||          
T  26884308 aaagggtcgcctcgttttgcctgtttttgttggtgtggatcctactgatgtgcgacatcatacaggtagttatggtgaagcattggctgaccatgaaaaa 26884407  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 204  Q
     |||||||||||||| ||||||||||  |||||||||||| ||||||| ||||| |||| || | ||||||||| ||||||||||||    
T  26884408 aggtttcaaaatgataaggataacatggagaggttgcagcgatggaaaatggctatgaggcaagttgctaacttgtccggctaccat 26884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 28781286 - 28781477
Alignment:
Q  22 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 121  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| ||||  ||| ||| ||||||||||||  |||       |||    
T  28781286 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtccttatggtgaagcattggctggacatgaaaagaggt 28781385  T
Q  122 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||  |||||||    
T  28781386 ttcaaaatgataaggataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccattctagtcct 28781477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 26861755 - 26861951
Alignment:
Q  17 aaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnn 116  Q
    |||||||||||||| ||||||||||||||| |||  |||| ||| || ||||||||||||||| ||||| ||| ||| ||||||||||| |||||         
T  26861755 aaaagggtcgcgtcgttttgcctgttttctatggcatggatcctactaatgtgcgacatcatagaggtatttatggtgaagcattggctaagcatgaaaa 26861854  T
Q  117 nnggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
      ||||||||||||||  |||||||||  |||||||||||  ||||||||| ||||||| ||| ||||||||||| || |||||||||  |||||||    
T  26861855 aaggtttcaaaatgatatggataacatggagaggttgcagagatggaaagttgctctgaaccaagctgctaacttgtcaggctaccattttagtcct 26861951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 279
Target Start/End: Complemental strand, 27531227 - 27530983
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 131  Q
    |||||||||||||  |||||||||| ||| || ||||||||||||| | |||||| || ||| ||||||| |||| ||||        ||||||||||||    
T  27531227 ttttgcctgtttttattggtgtggatcctactgatgtgcgacatcacacaggtagatatggtgaagcattagctgtgcataaaaaaaagtttcaaaatga 27531128  T
Q  132 tgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacacta 231  Q
    | |||||||||   |||||||||||||||||||||  ||||||||||| || |||||||| || ||| | ||| |||     | ||||||  | ||  ||    
T  27531127 taaggataacactgagaggttgcagcaatggaaagaagctctgagccaagcggctaacttgtctggccagcattata---aacatgggtagcccacttta 27531031  T
Q  232 cataaatcctatttttcccttttgtattttctttattcaatttcaatt 279  Q
    | ||||||||||||||||||||| |||||||||| || ||||||||||    
T  27531030 cttaaatcctatttttcccttttatattttctttctttaatttcaatt 27530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 27724889 - 27724796
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 111  Q
    |||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||    
T  27724889 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcat 27724796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 31284429 - 31284524
Alignment:
Q  16 caaaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 111  Q
    ||||| |||||| || ||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||| ||  ||||||||||| |||||    
T  31284429 caaaatggtcgcctcgttttgcccgttttctttggcgtggatccttctcatgtgcgacatcatagaggtagttatggagaagcattggctaagcat 31284524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 28227107 - 28227174
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 99  Q
    |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  28227107 ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 28227174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 26646755 - 26646875
Alignment:
Q  151 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctatttttccc 250  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||   |||||| | ||  ||| |||| | | |||||||     
T  26646755 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct---gggtaccccactttacttaaaccttgtttttcct 26646851  T
Q  251 ttttgtattttctttattcaattt 274  Q
    |||| ||||||||||||| |||||    
T  26646852 ttttatattttctttatttaattt 26646875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 274
Target Start/End: Original strand, 26752723 - 26752843
Alignment:
Q  151 ttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctgggtactcaacactacataaatcctatttttccc 250  Q
    ||||| ||||||||  ||||||||| ||| ||||||||||| ||||| |||||| ||||||||   |||||| | ||  ||| |||| | | |||||||     
T  26752723 ttgcatcaatggaagttggctctgacccaagctgctaacttgtccggataccattatagtcct---gggtaccccactttacttaaaccttgtttttcct 26752819  T
Q  251 ttttgtattttctttattcaattt 274  Q
    |||| ||||||||||||| |||||    
T  26752820 ttttatattttctttatttaattt 26752843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 28234720 - 28234861
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 131  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |    
T  28234720 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa 28234819  T
Q  132 tgaggataacataaagaggttgcagcaatggaaagtggctct 173  Q
      ||||||||||  ||||||||||| |||||||  |||||||    
T  28234820 caaggataacatggagaggttgcagaaatggaagatggctct 28234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 28325657 - 28325717
Alignment:
Q  51 tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 111  Q
    ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  28325657 tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 28325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 28181271 - 28181338
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 99  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| |||||||||    
T  28181271 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagca 28181338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 29826171 - 29826229
Alignment:
Q  19 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatca 77  Q
    ||||||||  || |||||||| |||||| || |||||| ||||||||||||||||||||    
T  29826171 aagggtcgtctcgttttgcctattttctatgatgtggatccttctcatgtgcgacatca 29826229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 26811674 - 26811711
Alignment:
Q  40 gttttctttggtgtggaaccttctcatgtgcgacatca 77  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  26811674 gttttctatggtgtggaaccttctcacgtgcgacatca 26811711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 3465 - 3260
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || || |||||||||| ||||||||||||||| ||  ||||||||||| |||||||||||| ||| |||||||||||||||||          
T  3465 aaagggtcgcctcgttctgcctgttttatttggtgtggaacctactattgtgcgacatcgtaaaggtagttatggtgaagcattggctgagcatgaaaag 3366  T
Q  118 nggtttcaaaatgatgaggataa-cataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcct 216  Q
     ||||||||||||||  | | || |||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3365 aggtttcaaaatgatccgaaaaaacatggagaggttgcagcgatggaaagtggctctgagccaggctgctaacttgtccggctaccatgatagtcctcct 3266  T
Q  217 gggtac 222  Q
    ||||||    
T  3265 gggtac 3260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 14400 - 14196
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||| ||||||||||| ||| |||||||||||||||||          
T  14400 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatcagaaaggtagttatggtgaagcattggctgagcatgaaaag 14301  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcctcctg 217  Q
     ||||||||||||||  | | |||||  |||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14300 aggtttcaaaatgatccgaaaaacatggagaggttgcagggatggaaagaggctctgagccaggctgctaacttgtccggctaccatgatagtcctcctg 14201  T
Q  218 ggtac 222  Q
    |||||    
T  14200 ggtac 14196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 59714 - 59902
Alignment:
Q  19 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 118  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  59714 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 59813  T
Q  119 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 207  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  59814 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 59902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 18073906 - 18074094
Alignment:
Q  19 aagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnn 118  Q
    |||||| || || ||||||||||||||||||||||||||||| || ||||||||||||||| |||||| || |||||||||||||||||||||           
T  18073906 aagggttgcctcgttttgcctgttttctttggtgtggaacctactgatgtgcgacatcatacaggtaggtatggtaaagcattggctgagcatgaaaata 18074005  T
Q  119 ggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgat 207  Q
    ||||||||||||||  | | |||||  ||||||||||||||||||||||||||||||| | ||||||||||||  || |||||||||||    
T  18074006 ggtttcaaaatgatacgaaaaacatggagaggttgcagcaatggaaagtggctctgagtctggctgctaacttgcccagctaccatgat 18074094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 5090984 - 5090905
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 111  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||| |  || ||||| ||| ||||| | |||||||||    
T  5090984 ttttgcctattttctatggtgtggaaccttctcatgtgcgatatcagactggaagttatggtgaagcacttgctgagcat 5090905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 17989065 - 17989019
Alignment:
Q  39 tgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtag 86  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  17989065 tgttttctttggtgtggaacc-tctgatgtgcgacatcatacaggtag 17989019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 18655377 - 18655313
Alignment:
Q  149 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18655377 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattctagtcct 18655313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 18723985 - 18723921
Alignment:
Q  149 ggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccatgatagtcct 213  Q
    ||||||| ||||||||  ||||||||| | | ||||||||||| ||||||||||||  |||||||    
T  18723985 ggttgcatcaatggaagttggctctgaccgaagctgctaacttgtccggctaccattttagtcct 18723921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 4715 - 4529
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnn 117  Q
    |||||||||| || |||||||||||||||| || ||||||||| || | ||||||||||  ||||||||||| ||| |||||||||||||||||          
T  4715 aaagggtcgcctcgttttgcctgttttcttcggcgtggaacctactaacgtgcgacatctgaaaggtagttatggtgaagcattggctgagcatgaaaag 4616  T
Q  118 nggtttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 204  Q
     |||||||||||||| || |||||||  |||||||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  4615 aggtttcaaaatgataagaataacatggagaggttgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 13672 - 13490
Alignment:
Q  22 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 121  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||    
T  13672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 13573  T
Q  122 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 204  Q
    ||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  13572 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 13490  T

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Target: scaffold0419 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 7672 - 7854
Alignment:
Q  22 ggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggt 121  Q
    |||||| || ||||||||||||||||||||||||| ||| || ||||||||||||||| |||| |||| ||| ||||||||||||  |||       |||    
T  7672 ggtcgcctcgttttgcctgttttctttggtgtggatcctactaatgtgcgacatcatacaggtcgttatggtgaagcattggctggacatgaaaagaggt 7771  T
Q  122 ttcaaaatgatgaggataacataaagaggttgcagcaatggaaagtggctctgagccaggctgctaacttttccggctaccat 204  Q
    ||||||||||| || |||||||  || | ||||| ||||||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  7772 ttcaaaatgataagaataacatggagcgattgcatcaatggaagttggctctgacccaagctgctaacttgtccggctaccat 7854  T

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Target: scaffold0038 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 27605 - 27672
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagca 99  Q
    |||||||  |||||| || ||||||||||||||||||||||||||| || || ||||| |||||||||    
T  27605 ttttgccaattttctatgatgtggaaccttctcatgtgcgacatcacaagggcagttatggtaaagca 27672  T

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Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 34882 - 35023
Alignment:
Q  32 ttttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcatnnnnnnnggtttcaaaatga 131  Q
    |||||||  |||||| || ||||||||||||||| ||||||||||| || || ||||| ||||||||| ||| ||| |||        ||| |||||| |    
T  34882 ttttgccaattttctatgatgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggatgatcatataaagaagttccaaaataa 34981  T
Q  132 tgaggataacataaagaggttgcagcaatggaaagtggctct 173  Q
      ||||||||||  ||||||||||| |||||||  |||||||    
T  34982 caaggataacatggagaggttgcagaaatggaagatggctct 35023  T

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Target: scaffold0038; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 116972 - 117032
Alignment:
Q  51 tgtggaaccttctcatgtgcgacatcataaaggtagttacggtaaagcattggctgagcat 111  Q
    ||||||||||||||| ||||||||||| || || ||||| ||||||||| |||| ||||||    
T  116972 tgtggaaccttctcacgtgcgacatcacaagggcagttatggtaaagcactggccgagcat 117032  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28127710 - 28127639
Alignment:
Q  18 aaagggtcgcgtcattttgcctgttttctttggtgtggaaccttctcatgtgcgacatcataaaggtagtta 89  Q
    |||||||||| |  ||||||||||||||||||| ||||| ||| || |||||||| |||||| ||| |||||    
T  28127710 aaagggtcgcctagttttgcctgttttctttggcgtggatcctactgatgtgcgatatcatacagggagtta 28127639  T

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