View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16132_low_3 (Length: 487)
Name: NF16132_low_3
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 1026676 - 1026311
Alignment:
| Q |
1 |
atcagaaacaattctttggagttttaaattttgaagcttcactcttactctaaggtaacttactctcttaagctctcnnnnnnncttcagtcaatgtaat |
100 |
Q |
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| T |
1026676 |
atcagaaacaattctttggagttttaaattttgaagcttcactcttactctaaggtaacttactctcttaagctctctttttttcttcagtcaatgtaat |
1026577 |
T |
|
| Q |
101 |
atgtacattattagattaatgcactttgttttataagttctatactacggtcttgaccttaatttgagcttcaaaattgacaataagaatataatgcatg |
200 |
Q |
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| T |
1026576 |
atgtacattattagattaatgcactttgttttataagttctatactacggtcttgaccttaatttgagcttcaaaattgacaataagaatataatgcatg |
1026477 |
T |
|
| Q |
201 |
caatttatatttatgatataatgnnnnnnnnnnnnnngttgaaatctattcattcaatattaaactttgaaagtggatcttaactgcattttggatcttc |
300 |
Q |
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| T |
1026476 |
caatttatatttatgatataatg--tattttttttttgttgaaatctattcattcaatattaaactttgaaagtggatcttaattgcattttggatcttc |
1026379 |
T |
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| Q |
301 |
atcaatttgatgcatttttacatatctactagctaagctatttactactatccttcaaccttaacaat |
368 |
Q |
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| T |
1026378 |
atcaatttgatgcatttttacatatctactagctaagctatttactactatccttcaaccttaacaat |
1026311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 469
Target Start/End: Complemental strand, 1026249 - 1026210
Alignment:
| Q |
430 |
cttgtttaagagcaatggatgacccctaatatgactgtga |
469 |
Q |
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| T |
1026249 |
cttgtttaagagcaatggatgacccctaatatgactgtga |
1026210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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