View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16132_low_4 (Length: 465)
Name: NF16132_low_4
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 27644581 - 27644128
Alignment:
| Q |
17 |
acaagagtgttgagtatgtgaggaagtattttggagttgaggatactgagtttttgccgggagaagaggaaaaacttcgtgaagaacttgcttggacttt |
116 |
Q |
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| T |
27644581 |
acaagagtgttgagtatgtgaggaagtattttggagttgaggatactgagtttttgccgggagaagaggaaaagcttcgtgaagaacttgcttggacttt |
27644482 |
T |
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| Q |
117 |
tacaggagttgatgaagatgaagatgaagacgaggacgaggacgaggacgccgatgaaaagattgaagataaagttgaggataaaaaagatgttgaggag |
216 |
Q |
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| T |
27644481 |
tacaggagttgatgaagatgaagatgaagatgaagacgaggacg------ccgatgaaaagattgaagataaagttgagaataaaaaagatgttgaggag |
27644388 |
T |
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| Q |
217 |
gatcaaattgaatagaatagttattatga----------------aacagaattagggttttgt--ccccattgttgaaattatgaattgaaattacaaa |
298 |
Q |
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| T |
27644387 |
gatcaaattgaatagaatagttattatgatatgtttttcttatgaaacataattagggttttttttccccaatgttgaaatcatgaattgaaattacaaa |
27644288 |
T |
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| Q |
299 |
tgttacctttgccctaataatacaatttgagtttgtttttggttttagtgcgttggtggttcttgtttattcataatacttttacaaatcaacactaatt |
398 |
Q |
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| T |
27644287 |
tgttacctttgccctaataatacaatttgagtttgtttgtggttttagtgcgttggtggttcttgtttattcataatacttttacaaatcaacactaatt |
27644188 |
T |
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| Q |
399 |
ttcttgattttggattcttatatgtcaacaatgcgtcattgttgaactattcctttgatt |
458 |
Q |
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| T |
27644187 |
ttcttgattttggattcttatatgtcaacaatgcgtcattgttgaactattcctttgatt |
27644128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 27548868 - 27548728
Alignment:
| Q |
240 |
ttatgaaacagaattagggttttgt-ccccattgttgaaattatgaattgaaattacaaatgttacctttgccctaataatacaatttgagtttgttttt |
338 |
Q |
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| T |
27548868 |
ttatgaaacagaattatggtttttttccccaatgttgaaattatgaattgaaattacaaatgttacctttgccctaataatacaatttgggtttgttttt |
27548769 |
T |
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| Q |
339 |
ggttttagtgcgttggtggttcttgtttattcataatactt |
379 |
Q |
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| T |
27548768 |
agttttagtgcgttggtggttcttgtttattcataatactt |
27548728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 27549077 - 27548945
Alignment:
| Q |
17 |
acaagagtgttgagtatgtgaggaagtattttggagttgaggatactgagtttttgccgggagaagaggaaaaacttcgtgaagaacttgcttggacttt |
116 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
27549077 |
acaagagtgtggagtatgtgaggaagtattttggcattgaggatactgagtttttgccgggagaagaggaaaagcttcgtgaagaacttgcttggagttt |
27548978 |
T |
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| Q |
117 |
tacaggagttgatgaagatgaagatgaagacga |
149 |
Q |
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| T |
27548977 |
tacaggagttgacaaagatgaagatgaagacga |
27548945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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