View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16132_low_5 (Length: 384)

Name: NF16132_low_5
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16132_low_5
NF16132_low_5
[»] chr5 (37 HSPs)
chr5 (175-324)||(6401478-6401627)
chr5 (188-326)||(21814254-21814392)
chr5 (194-322)||(19452998-19453126)
chr5 (175-325)||(21522730-21522880)
chr5 (175-325)||(21533296-21533446)
chr5 (254-325)||(21576685-21576756)
chr5 (172-326)||(39698518-39698672)
chr5 (160-324)||(3966467-3966632)
chr5 (254-326)||(30098977-30099049)
chr5 (194-325)||(7677704-7677835)
chr5 (176-303)||(19579682-19579809)
chr5 (229-324)||(21542064-21542159)
chr5 (195-246)||(39758272-39758323)
chr5 (194-295)||(18592072-18592173)
chr5 (157-253)||(32426870-32426967)
chr5 (215-272)||(37328826-37328883)
chr5 (157-323)||(43001762-43001922)
chr5 (213-274)||(41091237-41091298)
chr5 (213-325)||(32766872-32766984)
chr5 (261-325)||(42029807-42029871)
chr5 (254-325)||(43564929-43565000)
chr5 (213-326)||(30098344-30098457)
chr5 (254-323)||(30502330-30502399)
chr5 (254-323)||(30542673-30542742)
chr5 (213-257)||(6471886-6471930)
chr5 (175-271)||(13287383-13287478)
chr5 (152-239)||(14674226-14674313)
chr5 (255-326)||(17123097-17123167)
chr5 (230-280)||(11685974-11686023)
chr5 (188-258)||(39205873-39205943)
chr5 (254-303)||(15382533-15382582)
chr5 (254-323)||(21190998-21191067)
chr5 (175-263)||(15410439-15410527)
chr5 (265-325)||(21194063-21194123)
chr5 (261-325)||(31084383-31084447)
chr5 (230-298)||(36642719-36642786)
chr5 (254-322)||(39268541-39268609)
[»] chr1 (46 HSPs)
chr1 (157-325)||(25934572-25934746)
chr1 (22-155)||(6355916-6356049)
chr1 (175-324)||(10577676-10577814)
chr1 (215-326)||(47989517-47989628)
chr1 (156-320)||(9629834-9630003)
chr1 (175-325)||(41597410-41597549)
chr1 (215-325)||(32461393-32461502)
chr1 (215-325)||(5944303-5944413)
chr1 (162-326)||(18556384-18556548)
chr1 (173-324)||(6414932-6415082)
chr1 (215-325)||(9828064-9828174)
chr1 (213-276)||(44482248-44482311)
chr1 (175-271)||(5376483-5376579)
chr1 (194-302)||(34315711-34315819)
chr1 (213-325)||(36906015-36906126)
chr1 (152-258)||(6427308-6427413)
chr1 (263-324)||(12919002-12919063)
chr1 (213-274)||(25361904-25361965)
chr1 (175-303)||(38503300-38503426)
chr1 (215-311)||(6612114-6612210)
chr1 (213-280)||(34371731-34371798)
chr1 (230-325)||(40917784-40917879)
chr1 (215-325)||(31694639-31694749)
chr1 (195-323)||(1486646-1486768)
chr1 (157-254)||(52903211-52903308)
chr1 (254-326)||(22515826-22515898)
chr1 (191-254)||(30749835-30749899)
chr1 (191-254)||(30771286-30771350)
chr1 (213-296)||(27471524-27471607)
chr1 (254-325)||(37598879-37598950)
chr1 (215-298)||(48147993-48148076)
chr1 (181-254)||(13436444-13436517)
chr1 (226-323)||(17778577-17778670)
chr1 (254-326)||(46348322-46348394)
chr1 (158-254)||(46348383-46348479)
chr1 (254-325)||(1815305-1815376)
chr1 (254-325)||(18337377-18337448)
chr1 (215-325)||(6427484-6427594)
chr1 (213-258)||(7918207-7918252)
chr1 (213-258)||(20157346-20157391)
chr1 (254-323)||(29163323-29163392)
chr1 (229-298)||(30173718-30173787)
chr1 (261-306)||(31015092-31015137)
chr1 (282-326)||(6574053-6574097)
chr1 (213-273)||(21038101-21038161)
chr1 (215-275)||(28273067-28273127)
[»] chr6 (51 HSPs)
chr6 (188-325)||(18367829-18367966)
chr6 (188-326)||(16488518-16488656)
chr6 (175-325)||(9107299-9107449)
chr6 (213-325)||(10339054-10339167)
chr6 (175-325)||(16766677-16766827)
chr6 (175-325)||(13789134-13789273)
chr6 (175-325)||(13797753-13797892)
chr6 (157-325)||(17435162-17435329)
chr6 (175-325)||(8365448-8365598)
chr6 (194-325)||(17327590-17327715)
chr6 (188-280)||(26562682-26562774)
chr6 (216-327)||(7248379-7248490)
chr6 (188-297)||(5970065-5970174)
chr6 (175-323)||(12696304-12696446)
chr6 (215-324)||(31384940-31385048)
chr6 (254-322)||(32978842-32978910)
chr6 (254-325)||(34595182-34595253)
chr6 (215-297)||(8714000-8714082)
chr6 (187-295)||(8931561-8931669)
chr6 (254-325)||(4877991-4878061)
chr6 (198-272)||(4388088-4388162)
chr6 (157-254)||(5626696-5626798)
chr6 (215-305)||(9522911-9523001)
chr6 (213-326)||(9629401-9629514)
chr6 (157-239)||(17841604-17841686)
chr6 (213-258)||(9025490-9025535)
chr6 (254-327)||(28152146-28152219)
chr6 (277-325)||(4388151-4388199)
chr6 (175-258)||(7086775-7086858)
chr6 (175-254)||(8776973-8777052)
chr6 (175-258)||(9027158-9027241)
chr6 (229-264)||(20576623-20576658)
chr6 (254-325)||(28715343-28715414)
chr6 (213-271)||(9617452-9617510)
chr6 (232-274)||(10294144-10294186)
chr6 (213-325)||(32839571-32839687)
chr6 (157-186)||(5970188-5970217)
chr6 (215-256)||(7151432-7151473)
chr6 (213-254)||(7265593-7265634)
chr6 (213-274)||(9195734-9195795)
chr6 (175-252)||(9658859-9658936)
chr6 (213-254)||(14155239-14155280)
chr6 (213-254)||(32511666-32511707)
chr6 (194-254)||(7377978-7378038)
chr6 (270-322)||(7996325-7996377)
chr6 (270-322)||(8022424-8022476)
chr6 (175-259)||(10888969-10889053)
chr6 (234-274)||(11424691-11424731)
chr6 (158-254)||(28152062-28152157)
chr6 (152-200)||(31061033-31061081)
chr6 (279-327)||(34446644-34446692)
[»] chr2 (36 HSPs)
chr2 (188-326)||(36096303-36096441)
chr2 (175-325)||(34784911-34785061)
chr2 (175-273)||(18054784-18054883)
chr2 (157-325)||(24009265-24009414)
chr2 (157-326)||(41843403-41843566)
chr2 (157-325)||(37419704-37419873)
chr2 (229-325)||(35056902-35056998)
chr2 (215-325)||(30717459-30717569)
chr2 (213-325)||(32749754-32749866)
chr2 (195-325)||(11223793-11223922)
chr2 (175-325)||(20242667-20242806)
chr2 (231-325)||(26769547-26769641)
chr2 (254-323)||(2438661-2438730)
chr2 (187-311)||(28524418-28524542)
chr2 (213-324)||(44860338-44860449)
chr2 (235-325)||(42511322-42511411)
chr2 (175-323)||(15657844-15657992)
chr2 (254-326)||(18840952-18841024)
chr2 (230-293)||(27286253-27286316)
chr2 (157-254)||(37558939-37559036)
chr2 (175-323)||(36756275-36756423)
chr2 (261-329)||(38117095-38117163)
chr2 (215-258)||(18622626-18622669)
chr2 (175-246)||(21616742-21616813)
chr2 (215-325)||(12668352-12668462)
chr2 (156-245)||(15909641-15909737)
chr2 (213-326)||(18889518-18889632)
chr2 (224-278)||(19614212-19614266)
chr2 (254-324)||(28596517-28596587)
chr2 (156-186)||(31283991-31284021)
chr2 (213-305)||(2331812-2331902)
chr2 (254-311)||(12224271-12224328)
chr2 (254-306)||(5367240-5367292)
chr2 (277-325)||(18054716-18054764)
chr2 (255-323)||(19942314-19942382)
chr2 (157-185)||(19980664-19980692)
[»] chr4 (35 HSPs)
chr4 (175-327)||(5414099-5414251)
chr4 (195-326)||(46083919-46084050)
chr4 (213-324)||(30982808-30982919)
chr4 (215-325)||(22234819-22234929)
chr4 (157-299)||(37496667-37496808)
chr4 (188-325)||(24613630-24613767)
chr4 (230-325)||(19500787-19500882)
chr4 (254-326)||(23292925-23292997)
chr4 (218-325)||(19482691-19482798)
chr4 (159-256)||(30298910-30299008)
chr4 (159-256)||(30327778-30327876)
chr4 (207-305)||(44132594-44132691)
chr4 (213-326)||(903940-904053)
chr4 (215-323)||(19312355-19312463)
chr4 (267-325)||(715545-715603)
chr4 (267-325)||(752871-752929)
chr4 (158-259)||(12895111-12895211)
chr4 (175-256)||(13783261-13783342)
chr4 (261-326)||(28964187-28964252)
chr4 (265-325)||(29205527-29205587)
chr4 (254-326)||(35157924-35157996)
chr4 (255-326)||(8423657-8423728)
chr4 (213-324)||(38148655-38148766)
chr4 (254-325)||(49431074-49431145)
chr4 (254-324)||(12323968-12324038)
chr4 (213-275)||(13134468-13134530)
chr4 (213-259)||(15659755-15659801)
chr4 (213-259)||(18576032-18576078)
chr4 (255-325)||(19097835-19097904)
chr4 (188-246)||(40613443-40613501)
chr4 (154-187)||(3947844-3947877)
chr4 (213-258)||(7970537-7970582)
chr4 (157-186)||(23293072-23293101)
chr4 (202-254)||(42014965-42015018)
chr4 (218-254)||(15029788-15029824)
[»] chr8 (33 HSPs)
chr8 (195-326)||(34450960-34451096)
chr8 (212-325)||(26902104-26902217)
chr8 (188-324)||(43737752-43737877)
chr8 (172-325)||(18964154-18964309)
chr8 (175-325)||(29510233-29510383)
chr8 (213-326)||(11803277-11803390)
chr8 (178-325)||(15816058-15816205)
chr8 (175-325)||(22651956-22652106)
chr8 (188-324)||(29447040-29447176)
chr8 (230-325)||(29447479-29447574)
chr8 (231-324)||(24205749-24205842)
chr8 (175-272)||(36934650-36934747)
chr8 (175-294)||(2572016-2572135)
chr8 (254-325)||(3951476-3951547)
chr8 (189-268)||(14634127-14634206)
chr8 (215-325)||(4673354-4673464)
chr8 (215-325)||(6065586-6065696)
chr8 (157-254)||(36450754-36450851)
chr8 (157-253)||(14134661-14134757)
chr8 (254-325)||(33405324-33405395)
chr8 (215-325)||(11944685-11944795)
chr8 (175-280)||(24362175-24362281)
chr8 (232-325)||(21465449-21465542)
chr8 (232-272)||(25172680-25172720)
chr8 (178-246)||(34897068-34897136)
chr8 (215-274)||(11927066-11927125)
chr8 (261-323)||(3025606-3025668)
chr8 (254-323)||(926730-926799)
chr8 (194-246)||(3951544-3951597)
chr8 (232-321)||(4122182-4122271)
chr8 (213-254)||(4786338-4786379)
chr8 (254-298)||(5813640-5813684)
chr8 (216-283)||(28384964-28385032)
[»] scaffold0623 (1 HSPs)
scaffold0623 (180-324)||(5926-6070)
[»] chr3 (40 HSPs)
chr3 (157-325)||(13845465-13845614)
chr3 (160-325)||(14209079-14209243)
chr3 (188-323)||(4987222-4987357)
chr3 (215-326)||(34185051-34185162)
chr3 (231-325)||(41961579-41961673)
chr3 (194-255)||(14028006-14028067)
chr3 (175-324)||(14216872-14217021)
chr3 (175-324)||(14223001-14223150)
chr3 (254-326)||(35222986-35223058)
chr3 (229-296)||(8039793-8039860)
chr3 (254-325)||(20503513-20503584)
chr3 (215-321)||(11665964-11666070)
chr3 (215-326)||(25064929-25065038)
chr3 (213-276)||(16192728-16192791)
chr3 (157-325)||(40993275-40993432)
chr3 (212-308)||(2941575-2941660)
chr3 (215-289)||(16789032-16789106)
chr3 (261-323)||(29508505-29508567)
chr3 (215-325)||(49651716-49651825)
chr3 (228-323)||(13806269-13806363)
chr3 (254-325)||(55401123-55401194)
chr3 (215-259)||(25948882-25948926)
chr3 (215-298)||(14832119-14832202)
chr3 (175-254)||(25093482-25093561)
chr3 (213-303)||(10690214-10690303)
chr3 (213-259)||(11313795-11313841)
chr3 (215-257)||(15314873-15314915)
chr3 (215-325)||(15796223-15796333)
chr3 (265-323)||(28918062-28918120)
chr3 (188-246)||(35222931-35222989)
chr3 (254-324)||(8789489-8789561)
chr3 (254-303)||(10955000-10955049)
chr3 (267-324)||(15999951-16000008)
chr3 (194-325)||(27505245-27505370)
chr3 (194-254)||(13414468-13414528)
chr3 (261-324)||(15864887-15864950)
chr3 (157-185)||(18426917-18426945)
chr3 (157-324)||(37077320-37077488)
chr3 (155-191)||(45451521-45451557)
chr3 (209-325)||(55212977-55213092)
[»] chr7 (38 HSPs)
chr7 (188-325)||(24339635-24339772)
chr7 (157-286)||(32308082-32308211)
chr7 (254-325)||(21880200-21880271)
chr7 (254-325)||(598256-598327)
chr7 (215-326)||(2334270-2334380)
chr7 (254-325)||(18212973-18213044)
chr7 (175-286)||(19206030-19206141)
chr7 (202-303)||(39138451-39138541)
chr7 (215-325)||(7438726-7438836)
chr7 (158-264)||(25791616-25791721)
chr7 (229-326)||(25822689-25822786)
chr7 (261-325)||(5409771-5409835)
chr7 (261-325)||(9778560-9778624)
chr7 (215-278)||(15902842-15902905)
chr7 (213-260)||(22602704-22602751)
chr7 (213-280)||(26329356-26329423)
chr7 (240-286)||(9933318-9933364)
chr7 (213-259)||(17307911-17307957)
chr7 (254-324)||(20549839-20549909)
chr7 (157-258)||(18215182-18215283)
chr7 (157-271)||(8160374-8160492)
chr7 (213-265)||(35297661-35297713)
chr7 (229-324)||(4794923-4795018)
chr7 (229-311)||(7058460-7058540)
chr7 (175-325)||(43027404-43027548)
chr7 (194-240)||(1656675-1656721)
chr7 (157-274)||(29787351-29787465)
chr7 (157-187)||(30730981-30731011)
chr7 (261-326)||(32093953-32094019)
chr7 (213-258)||(5233647-5233692)
chr7 (213-254)||(9482952-9482993)
chr7 (157-254)||(15680771-15680868)
chr7 (209-246)||(17851445-17851482)
chr7 (187-259)||(7328686-7328758)
chr7 (261-305)||(8234201-8234245)
chr7 (230-326)||(11831467-11831563)
chr7 (175-246)||(18213041-18213113)
chr7 (215-323)||(26033392-26033500)
[»] scaffold0003 (1 HSPs)
scaffold0003 (175-325)||(241574-241724)
[»] scaffold0116 (1 HSPs)
scaffold0116 (175-259)||(9878-9962)
[»] scaffold0044 (1 HSPs)
scaffold0044 (213-318)||(53198-53303)
[»] scaffold0036 (1 HSPs)
scaffold0036 (213-323)||(9678-9788)
[»] scaffold0136 (1 HSPs)
scaffold0136 (215-325)||(3778-3888)
[»] scaffold0123 (1 HSPs)
scaffold0123 (195-293)||(44486-44584)
[»] scaffold0020 (2 HSPs)
scaffold0020 (213-295)||(137798-137880)
scaffold0020 (175-258)||(135308-135391)
[»] scaffold0019 (1 HSPs)
scaffold0019 (215-325)||(71745-71855)
[»] scaffold0022 (1 HSPs)
scaffold0022 (209-264)||(99907-99962)
[»] scaffold0004 (1 HSPs)
scaffold0004 (261-324)||(92877-92940)
[»] scaffold0793 (1 HSPs)
scaffold0793 (267-325)||(4821-4879)
[»] scaffold0171 (2 HSPs)
scaffold0171 (215-325)||(23531-23641)
scaffold0171 (215-259)||(23440-23484)
[»] scaffold0306 (1 HSPs)
scaffold0306 (254-323)||(13454-13523)
[»] scaffold0152 (1 HSPs)
scaffold0152 (254-323)||(21804-21873)
[»] scaffold0279 (2 HSPs)
scaffold0279 (154-253)||(17732-17828)
scaffold0279 (231-294)||(17840-17903)
[»] scaffold0008 (1 HSPs)
scaffold0008 (175-275)||(263351-263451)
[»] scaffold0103 (1 HSPs)
scaffold0103 (169-248)||(51785-51864)
[»] scaffold0652 (1 HSPs)
scaffold0652 (254-324)||(403-473)
[»] scaffold0380 (1 HSPs)
scaffold0380 (267-325)||(8662-8720)
[»] scaffold0122 (1 HSPs)
scaffold0122 (214-324)||(8685-8795)
[»] scaffold0450 (1 HSPs)
scaffold0450 (248-325)||(8564-8641)
[»] scaffold0361 (1 HSPs)
scaffold0361 (261-325)||(14582-14646)
[»] scaffold0227 (1 HSPs)
scaffold0227 (157-185)||(14993-15021)
[»] scaffold0039 (1 HSPs)
scaffold0039 (231-303)||(84924-84996)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 6401478 - 6401627
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||    
T  6401478 gacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattatatgtgtcggtgtcgtgtcagtgtcggacacgaca 6401577  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    | ||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  6401578 cgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcata 6401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 21814254 - 21814392
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||    
T  21814254 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacg 21814353  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||||||||| | ||  |||||||||||||    
T  21814354 gggacacgccttatccaaggaatgttcgtgcttcatagt 21814392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 194 - 322
Target Start/End: Complemental strand, 19453126 - 19452998
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    |||||||| |||||||||||||||||||||||||| |  |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||| || |    
T  19453126 cgacacagttaaattttttagaaaatcacaaaatataccgtaattatatgtgtcggtgtcgtgtcaatgtcggacacgacacatgtctcacacggagata 19453027  T
Q  294 cgccttatccaagaagtgcccgtgcttca 322  Q
    ||||||||||||| || | ||||||||||    
T  19453026 cgccttatccaaggagcgtccgtgcttca 19452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 21522730 - 21522880
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   ||||| ||||| ||| ||| ||||||||||| |  ||| |||||||||||| ||||||||||||||    
T  21522730 gacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgaca 21522829  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| | ||| ||||||||||| ||||||  |||| |||||| ||||||    
T  21522830 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 21533296 - 21533446
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   ||||| ||||| ||| ||| ||||||||||| |  ||| |||||||||||| ||||||||||||||    
T  21533296 gacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgaca 21533395  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| | ||| ||||||||||| ||||||  |||| |||||| ||||||    
T  21533396 cgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||| || |||| |||||||||||||    
T  21576756 gtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 326
Target Start/End: Original strand, 39698518 - 39698672
Alignment:
Q  172 acggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacg 271  Q
    ||||| ||||||||  |||||  |||||||||||   ||| | ||||||||| ||| ||||||||||| | ||||  ||||||||||| |||||||||||    
T  39698518 acggatacggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacacg 39698617  T
Q  272 acacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||  | || ||||| | ||||||||| |||| || |||| ||||||||||||||    
T  39698618 acatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 324
Target Start/End: Original strand, 3966467 - 3966632
Alignment:
Q  160 tgaagcacagatacggacac-ggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    |||||||| || |||||||| ||||||  ||| | |||||| |||||   ||| ||||||||||| ||| |||||||||||||||||| |||||||||||    
T  3966467 tgaagcacggacacggacactggacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T
Q  259 gatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
      |||||||||| |||  ||||  |||  |||||||| || |||| || |||| ||||||||||||    
T  3966567 agtgtcggacacaacatgtgtccaacagagggacacgtctaatccgaggagtgtccgtgcttcata 3966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 30099049 - 30098977
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||| ||||  |||||||| ||||    
T  30099049 gtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttcgtagt 30098977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 7677704 - 7677835
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    ||||||||||||   ||| | ||||||||| ||| ||||| ||||| | |||| |||||||||||| |||| |||||| |||||||| ||||| ||||||    
T  7677704 cgacacagctaataatttgaaaaaatcacataattcagtgcaattagaagtgtcggtgtcgtgtcggtgtctgacacgtcacatgtccgacaccgggaca 7677803  T
Q  294 cgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||| |||| || || | | |||||||||||    
T  7677804 cgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 303
Target Start/End: Original strand, 19579682 - 19579809
Alignment:
Q  176 acacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacac 275  Q
    ||||||||||  | ||| ||||||||||||   ||| ||||||||||| |||  |||| ||||| | |||| |||||||||||  ||||||||||||||     
T  19579682 acacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacat 19579781  T
Q  276 atgtctgacacggggacacgccttatcc 303  Q
    |||||| |||| ||||||||||| ||||    
T  19579782 atgtctaacaccgggacacgcctaatcc 19579809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 21542064 - 21542159
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||||||| | |||| |||||||||||| ||||||||||||||| |||| ||||| ||||||||||  ||||||| | || |||||| |||||    
T  21542064 cagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgccgaatccaaggaatgtccgtgcatcata 21542159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 39758272 - 39758323
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  39758272 gacacagctaaattttttagaaaatcacataattcagtgtaattatatgtgt 39758323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 18592072 - 18592173
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    |||||| |||||  |||| ||||||| ||| ||| || ||||||||||||||  |||||||||||| |||||||||| |||| |||||||||  ||||||    
T  18592072 cgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacacaacacgtgtctgacatcgggaca 18592171  T
Q  294 cg 295  Q
    ||    
T  18592172 cg 18592173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 32426967 - 32426870
Alignment:
Q  157 ctatgaagcacagatacggacacggacacca-acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtc 253  Q
    ||||||||||  ||||||||||||||||||  || |  |||||| ||||||||||||||||||||||| ||| || ||||||||| ||||| ||||||    
T  32426967 ctatgaagcatggatacggacacggacaccggacgcaccgacacggctaaattttttagaaaatcacataattcattgtaattatttgtgtcggtgtc 32426870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 37328883 - 37328826
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacga 272  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||    
T  37328883 aaaatcacaaaattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggacacga 37328826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 323
Target Start/End: Original strand, 43001762 - 43001922
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| |||||||||||||||||  ||| |||||||| |||||   ||| | ||||| ||| ||| ||||||||||| | |||||||||  |      
T  43001762 ctatgaagcacggatacggacacggacactgacatgtcgacactgctaataatttgaaaaaattacataattcagtgtaattacaagtgttggtgatg-- 43001859  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
        ||||||||||||||| ||||  ||||  |||||||||| |||| || |||| |||||||||||    
T  43001860 ----tgtcggacacgacacgtgtcaaacacctggacacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 41091298 - 41091237
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||| ||| |||||||||||||||||| | ||||||||| ||||||||| |||||    
T  41091298 agaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcaatgtcggacgcgaca 41091237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 32766984 - 32766872
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    |||||||| || ||| || |||||||||||||||| ||||||||||| ||||| | ||||||| |||| |||||  ||| ||| || |||  || ||||     
T  32766984 agaaaatcgcacaattcaatgtaattatatgtgtttgtgtcgtgtcggtgtcgaaaacgacacgtgtccgacaccaggatacgtctaatctgaggagtgt 32766885  T
Q  313 ccgtgcttcatag 325  Q
    |||||||||||||    
T  32766884 ccgtgcttcatag 32766872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 42029807 - 42029871
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||||||||| ||||  |||||||||||||| || |||| |||||| ||||||    
T  42029807 tgtcggacacgacacatgtctgtcacgtagacacgccttatccgaggagtgtccgtgcatcatag 42029871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 43564929 - 43565000
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||  |||| ||| | ||||||||||| |||| ||||||| |||||||||||||    
T  43564929 gtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 30098344 - 30098457
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| || ||||||||||  ||| ||| ||| |||  ||||||||||||||| |||| |||||  |||||| ||| |||| || | ||     
T  30098344 agaaaatcacataattcaatgtaattatagatgtcggtatcgagtcagtgtcggacacgacacgtgtcagacaccaggacacacctaatccgaggaatgt 30098443  T
Q  313 ccgtgcttcatagt 326  Q
    ||||||||||||||    
T  30098444 ccgtgcttcatagt 30098457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 30502399 - 30502330
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||||||||||||| ||||| |||||| |||| ||||||| | ||  ||||||||||    
T  30502399 gtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30502330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 30542742 - 30542673
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||||||||||||| ||||| |||||| |||| ||||||| | ||  ||||||||||    
T  30542742 gtgtcggtgtcggacacgacacatgtccgacactgggacatgcctaatccaaggattgttcgtgcttcat 30542673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 6471930 - 6471886
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgt 257  Q
    ||||||||||| ||| |||||||||||||||||| ||||||||||    
T  6471930 agaaaatcacataattcagtgtaattatatgtgtgggtgtcgtgt 6471886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 13287478 - 13287383
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacg 271  Q
    ||||||||||| ||||||||||||||| |||   ||| | ||||||||| ||| |||||||| || | |||| |||||||||||  |||||||||||    
T  13287478 gacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaagtgtcggtgtcgtgtc-ctgtcggacacg 13287383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 14674226 - 14674313
Alignment:
Q  152 atatactatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaatta 239  Q
    |||| ||||||||||| ||||| |||||||||||  ||||| ||||||||||||   ||| | ||||||||| |||  ||||||||||    
T  14674226 atatgctatgaagcacggatacagacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 14674313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 326
Target Start/End: Original strand, 17123097 - 17123167
Alignment:
Q  255 tgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||| ||| |||||||| ||||||| |||||||| |||||||| |||| || |||| ||||||||||||||    
T  17123097 tgtcggtgttggacacgaaacatgtccgacacggg-acacgcctaatccgaggagtgtccgtgcttcatagt 17123167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 11685974 - 11686023
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtc 280  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||    
T  11685974 agtgtaattatatgtgtcggtgtcgt-tcggtgtcggacacgacacgtgtc 11686023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 39205873 - 39205943
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    |||||||||||| |||||   ||| ||||||||| | |||   ||||||||||||||||||||||||||||    
T  39205873 acacgtcgacactgctaataatttgagaaaatcatataattaggtgtaattatatgtgttggtgtcgtgtc 39205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 15382533 - 15382582
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatcc 303  Q
    |||||| ||| |||||||||||||||| ||||| ||||||||||| ||||    
T  15382533 gtgtcggtgttggacacgacacatgtccgacaccgggacacgcctaatcc 15382582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 21191067 - 21190998
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||| |||| |||| ||| | ||||||||||| |||| || |||| |||||||||||    
T  21191067 gtgtcggtgtcggacacaacacgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 15410527 - 15410439
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgt 263  Q
    |||||||||||  ||||| |||||| |||||   ||| ||||||| | |  || ||||||||| |||||||||||||| ||||||||||    
T  15410527 gacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgttgtgtcgatgt 15410439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 21194123 - 21194063
Alignment:
Q  265 ggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||| ||||| ||| ||||||| |||| || |||| |||||||| ||||    
T  21194123 ggacacgacacatgtcagacaccggggcacgcctaatccgaggagtgtccgtgctttatag 21194063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 31084383 - 31084447
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||| |||| ||||| |||||| |||| |||| || |||| ||||| |||||||    
T  31084383 tgtcggacacgacacgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcatag 31084447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 36642786 - 36642719
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgcct 298  Q
    ||||||| |||| |||| |||||| ||| | ||||||||||||||| |||| ||||| |||||||||||    
T  36642786 agtgtaaatataagtgtcggtgtcatgttggtgtcggacacgacacgtgtccgacac-gggacacgcct 36642719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 39268609 - 39268541
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttca 322  Q
    |||||| ||| ||||||||||  |||| ||||| ||||||||||| |||| || |||| ||||||||||    
T  39268609 gtgtcggtgttggacacgacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 25934572 - 25934746
Alignment:
Q  157 ctatgaagcacagatacggacacggacacca------acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggt 250  Q
    ||||||||||| ||||||||||||||||||       ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  25934572 ctatgaagcacggatacggacacggacaccggacatgacacgccgacacagctaaattttctagaaaatcacaaaatacagtgtaattatatgtgtcggt 25934671  T
Q  251 gtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
     |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  25934672 atcgtgtcggtgtcggacacgacacgtgtctgacacggggatacgccttatccaaggagtgtccgtgcttcatag 25934746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 6355916 - 6356049
Alignment:
Q  22 gaagctccaaatattagagttcgatagaatacacagctaacaaatattaaacacaaacaaacgagcacttaattat-ttatactcatcgttttaataaaa 120  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6355916 gaagctccaaatattagagttctatagaacacacagctaacaaatattaaacacaaacaaacgagcacttaattatcttatactcatcgttttaataaaa 6356015  T
Q  121 gaaaatatctttttattttatttatacatacatat 155  Q
    ||||| ||| |||||||||||||||||||||||||    
T  6356016 gaaaaaatc-ttttattttatttatacatacatat 6356049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 10577814 - 10577676
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||           ||||||  | ||||||||||     
T  10577814 gacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatat-----------gtgtcgggggcggacacgacg 10577726  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    | |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10577725 cgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcata 10577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 47989517 - 47989628
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | |||| |||||||||||| |||||||||||||||||||||||||  ||||||||||| |||| || |||| ||    
T  47989517 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcctaatccgaggagtgtcc 47989616  T
Q  315 gtgcttcatagt 326  Q
    ||||||||||||    
T  47989617 gtgcttcatagt 47989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 320
Target Start/End: Complemental strand, 9630003 - 9629834
Alignment:
Q  156 actatgaagcacagatacg-----gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggt 250  Q
    |||||||||||| ||||||     |||| ||||||| |||| ||||||| |||||   ||| | ||||||| | ||| |||||| |||||| |||| |||    
T  9630003 actatgaagcacggatacggccacgacatggacaccgacacatcgacaccgctaataatttgataaaatcatataattcagtgtgattataagtgtcggt 9629904  T
Q  251 gtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgctt 320  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||  ||||||||||| ||||||||    
T  9629903 gtcgtgtcgatgtcggacacgacacatgtccgacaccgggacacgtctcgtccaagaagtgtccgtgctt 9629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 41597549 - 41597410
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||| ||||| | ||||||||||||||| |||||||||||||||||           ||||||||||||| |||||  ||||||||||||||    
T  41597549 gacacggacaccgacacgccaacacagctaaattttctagaaaatcacaaaata-----------tatgtgttggtgttgtgtccgtgtcggacacgaca 41597461  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | ||||||||||||||| |||| ||||||||| |||| | |||||||||||    
T  41597460 cgtgtctgacacggggatacgctttatccaaggagtgtctgtgcttcatag 41597410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 32461502 - 32461393
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| |||  | |||||||| | |||||||||| |||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| ||    
T  32461502 aaaatcacataatttaatgtaattacaagtgttggtgt-gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtcc 32461404  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  32461403 gtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 5944303 - 5944413
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||||| |||| ||||||||||||||| ||||||| ||||||||| ||||| |||| |||||| |||| || ||||  |    
T  5944303 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcgatgacggacacaacacatgtccgacaccgggatacgcctaatccgaggagtgttc 5944402  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  5944403 gtgcttcatag 5944413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 326
Target Start/End: Complemental strand, 18556548 - 18556384
Alignment:
Q  162 aagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgat 261  Q
    |||||| |||||||||||||||||  ||||| ||||||||||||   ||| | || |||||| |||  | |||||||| | || ||||||||||| || |    
T  18556548 aagcacggatacggacacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaattacaagtattggtgtcgtgacggt 18556449  T
Q  262 gtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||| ||| |||||| | || ||||| ||||||||||| |||| ||||||| ||||||||||||||    
T  18556448 gtcagacccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagt 18556384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 324
Target Start/End: Complemental strand, 6415082 - 6414932
Alignment:
Q  173 cggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacga 272  Q
    |||||||||||||  ||||| |||||  ||||| | ||| ||||||||||| |||||||| |||||| |||||| |||||| | ||||||||||||||||    
T  6415082 cggacacggacactgacacgccgacatcgctaattatttgagaaaatcacataatacagtttaattagatgtgtcggtgtcat-tcgatgtcggacacga 6414984  T
Q  273 cacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||| |||||||||| | |||||   | |||| || |||| ||||||||||||    
T  6414983 cacgtgtctgacaccgcgacacatttcatccgaggagtgtccgtgcttcata 6414932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 9828064 - 9828174
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| |||||||||| ||||||| |||||||||||  |||| |||||||||| |||| ||||| |||||||| || |||| || |||| ||    
T  9828064 aaaatcacataattcagtgtaattttatgtgtcggtgtcgtgtccgtgtcagacacgacacgtgtccgacaccgggacacgtctaatccgaggagtgtcc 9828163  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  9828164 gtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 44482248 - 44482311
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacaca 276  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacaca 44482311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 5376579 - 5376483
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacg 271  Q
    ||||||||||| |||||| |||||| |||||   ||| ||||||| ||| ||| ||||||||||| | |||| ||||||||||||||||||||||||    
T  5376579 gacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcggacacg 5376483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 34315711 - 34315819
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    |||||||||||||||||||| ||||  ||| ||| | |||||||||||||||| ||| |||| ||| ||||| ||||||||||||||| | |||  ||||    
T  34315711 cgacacagctaaattttttaaaaaactacataattcggtgtaattatatgtgtcggtatcgtatcggtgtcgaacacgacacatgtctaatacgttgaca 34315810  T
Q  294 cgccttatc 302  Q
    || ||||||    
T  34315811 cgtcttatc 34315819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 36906015 - 36906126
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| ||| ||||||||||||||||| || |||||  ||||||||||||| |  ||||||||| ||||||| ||| || |||| ||||     
T  36906015 agaaaatcacataattcagagtaattatatgtgttggcgttgtgtcagtgtcggacacgacccgcgtctgacactgggacacacctaatgcaag-agtgt 36906113  T
Q  313 ccgtgcttcatag 325  Q
    |||||||||||||    
T  36906114 ccgtgcttcatag 36906126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 6427308 - 6427413
Alignment:
Q  152 atatactatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtg 251  Q
    |||||||||||||||| || |||| |||||||||  ||||| | |||| |||||   ||| ||||||||||| ||| || ||||||||||||||||||||    
T  6427308 atatactatgaagcacggacacgg-cacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtg 6427406  T
Q  252 tcgtgtc 258  Q
    |||||||    
T  6427407 tcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 12919002 - 12919063
Alignment:
Q  263 tcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||||||||| ||||||||||||||||||| ||||||| |||||||  |||||||||||    
T  12919002 tcggacacgacacgtgtctgacacggggacacggcttatccgagaagtgttcgtgcttcata 12919063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 25361904 - 25361965
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||| ||| ||||||||||||||||||  ||||||||||| ||||||||||||||    
T  25361904 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacacgaca 25361965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 38503300 - 38503426
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||| |||||  |||||| |||||   ||| ||||||||| | | | |||||||||||||||||| |||||| |||||  |||||||| ||||    
T  38503300 gacacggacactaacacaccgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgtcctgtcg--gtcggacatgaca 38503397  T
Q  275 catgtctgacacggggacacgccttatcc 303  Q
    |||||||||| | ||||||| ||| ||||    
T  38503398 catgtctgacgcagggacacacctaatcc 38503426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 311
Target Start/End: Complemental strand, 6612210 - 6612114
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    ||||| ||| ||| ||||||||||| | |||| ||||||||||||||||||||||||| |  |||| |||||  |||||||||| ||||||| ||||    
T  6612210 aaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcctaatccaaggagtg 6612114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 34371731 - 34371798
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtc 280  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||| | ||||||| ||||||| ||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcggatacgacacgtgtc 34371798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 40917784 - 40917879
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||| | || | |||||||||||| ||| ||||||||||| |||| ||||| ||||||||||| |||| || | || |||||||||||||    
T  40917784 agtgtaattacaagtctcggtgtcgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 31694749 - 31694639
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| |||| |||||| | |||| |||||||||||| |||||||||| |||||| |  ||||| || |||||||| |||  || |||| ||    
T  31694749 aaaatcacataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacacaacacatattcgacaccggaacacgcctaatctgaggagtgtcc 31694650  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  31694649 gtgcttcatag 31694639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 323
Target Start/End: Complemental strand, 1486768 - 1486646
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacac 294  Q
    |||||||||||   ||| | ||||||||| ||| ||||||||||||| |||| |||||||      ||||||||||||||| |||| ||||| |||||||    
T  1486768 gacacagctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg------tgtcggacacgacacgtgtccgacaccgggacac 1486675  T
Q  295 gccttatccaagaagtgcccgtgcttcat 323  Q
    |||| |||| || |||| | |||||||||    
T  1486674 gcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 52903211 - 52903308
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||||||||| ||||||||||| |||||| ||| || | |||   ||| | ||||||| | ||| |||||||||||||||||| |||||||    
T  52903211 ctatgaagcacagatacagacacggacactaacacgccgataccgttaataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 22515898 - 22515826
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| ||||||||||||||||| || ||||| | ||||||||| |||| || |||| ||||||||||||||    
T  22515898 gtgtcggtgtcggacacgacacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatagt 22515826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 30749835 - 30749899
Alignment:
Q  191 cgtcgacacagctaaatttt-ttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||||||| |||| |||| ||||||||||||| ||| |||||||||||||||||| |||||||    
T  30749835 cgtcgacacatctaattttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 30771286 - 30771350
Alignment:
Q  191 cgtcgacacagctaaatttt-ttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||||||| |||| |||| ||||||||||||| ||| |||||||||||||||||| |||||||    
T  30771286 cgtcgacacatctaattttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 27471607 - 27471524
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgc 296  Q
    |||||| |||| ||| ||||||||||| ||||||||||||| | ||| ||| ||| ||||||| |||| ||||| |||||||||    
T  27471607 agaaaagcacataattcagtgtaattacatgtgttggtgtcatatcggtgttggatacgacacgtgtccgacaccgggacacgc 27471524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 37598879 - 37598950
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||| |||| ||||  ||||||||||| |||| || |||| |||||||||||||    
T  37598879 gtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 48148076 - 48147993
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgcct 298  Q
    ||||||| | ||| |||||||||||||| ||| |||||||||| ||| ||| |||||||  |||| |||||| |||||||||||    
T  48148076 aaaatcatataattcagtgtaattatatatgtcggtgtcgtgttgatatcgaacacgacgtatgtatgacaccgggacacgcct 48147993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 13436444 - 13436517
Alignment:
Q  181 gacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||| |||||| |||||| |||||   ||| || |||||||| ||| ||||||||||||||||||||||||||    
T  13436444 gacacgaacacgccgacactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcg 13436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 323
Target Start/End: Original strand, 17778577 - 17778670
Alignment:
Q  226 atacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||||||||||| | |||| |||||||||||| |||||    |||||| |||| ||||| |||||| |||| |||| |||||||  ||||||||||    
T  17778577 atacagtgtaattacaagtgtcggtgtcgtgtcggtgtcg----cgacacgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 46348394 - 46348322
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| ||||||||||||||| |||| ||||| | ||||||||| |||| ||  ||| ||||||||||||||    
T  46348394 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatagt 46348322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 46348479 - 46348383
Alignment:
Q  158 tatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||||||| |||||||||||||||||  ||||| ||||||||||||   ||| | ||||||| | |||  |||||||||| | |||| |||||||    
T  46348479 tatgaagcacggatacggacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 1815305 - 1815376
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||| ||||||||||||||| ||||| ||||||||||| |||  || |||| ||||| |||||||    
T  1815305 gtgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatctgaggagtgaccgtgattcatag 1815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 18337377 - 18337448
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||||||||| |||| |||| ||||| |||||| |||| |||| || |||| |||||||||||||    
T  18337377 gtgtcggtgtcggacacaacacgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 6427484 - 6427594
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| || ||||| || | ||||  ||||||||| |  |||||||||||||| |||| ||||| ||||||||||| |||  |  |||| ||    
T  6427484 aaaatcacataattcaatgtaactacaagtgtcagtgtcgtgtaggcgtcggacacgacacgtgtccgacaccgggacacgcctaatctgatgagtgtcc 6427583  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  6427584 gtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 7918252 - 7918207
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||||| ||| ||||||||||||||||||  ||||||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtc 7918207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 20157391 - 20157346
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||||| ||| ||||||||| |||||||| |||||||||||    
T  20157391 agaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 29163392 - 29163323
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| ||||||||||||||| || ||||||| |||||||| || |||  |||||||  ||||||||||    
T  29163392 gtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagtgttcgtgcttcat 29163323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 298
Target Start/End: Complemental strand, 30173787 - 30173718
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgcct 298  Q
    ||||||||||| | |||| |||||||||||  | |||||||||||||||||| ||| |  ||||||||||    
T  30173787 cagtgtaattacaagtgtcggtgtcgtgtccgtatcggacacgacacatgtccgactctaggacacgcct 30173718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 31015092 - 31015137
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaag 306  Q
    ||||||||||||||| |||||||||  ||||||||||| |||||||    
T  31015092 tgtcggacacgacacgtgtctgacatcgggacacgcctaatccaag 31015137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 6574053 - 6574097
Alignment:
Q  282 gacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||| ||||||||||| ||||||| |||| ||||||||||||||    
T  6574053 gacactgggacacgcctaatccaaggagtgaccgtgcttcatagt 6574097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 21038101 - 21038161
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgac 273  Q
    ||||||| ||| ||| ||||||||| ||||| ||  ||||||||||| |||||||||||||    
T  21038101 agaaaattacataattcagtgtaatcatatgcgtcagtgtcgtgtcggtgtcggacacgac 21038161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 28273127 - 28273067
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacac 275  Q
    ||||||| | ||| ||||||||||| | |||| |||||| | |||||||||||||||||||    
T  28273127 aaaatcatataattcagtgtaattacaagtgtcggtgtcctatcgatgtcggacacgacac 28273067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 51)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 18367829 - 18367966
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  18367829 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcagacacgacacatgtctgacacg 18367928  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  18367929 gggacacgccttatccaaggagtgtccgtgcttcatag 18367966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 16488656 - 16488518
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||    
T  16488656 acacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtctggcacg 16488557  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||||||||| | ||  |||||||||||||    
T  16488556 gggacacgccttatccaaggaatgttcgtgcttcatagt 16488518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 9107449 - 9107299
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||| |||||| ||||||||||||   ||| | ||||||||||||| ||||||||||| | |||| |||||||||||| |||||||||| ||     
T  9107449 gacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacg 9107350  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
      |||| ||||| ||||||| ||| |||| || ||||||||||||||||||    
T  9107349 tgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatag 9107299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 10339167 - 10339054
Alignment:
Q  213 agaaaatcacaaaatacagtgt-aattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    ||||||||||| ||| |||||| ||||||||||||  ||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |||  || ||||    
T  10339167 agaaaatcacataattcagtgttaattatatgtgtcagtgccgtgtcggtgtcggacacgacacatgtccgacactgggacacgcctaatcggaggagtg 10339068  T
Q  312 cccgtgcttcatag 325  Q
     |||||||||||||    
T  10339067 tccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 16766677 - 16766827
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||| ||||||  ||||| ||||||||||||   ||| | ||||||||| ||| ||||||||||| | |||| |||||||||||| |||||||||| |||    
T  16766677 gacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaaca 16766776  T
Q  275 catgtctgacacggggacacgccttatcc-aagaagtgcccgtgcttcatag 325  Q
    | |||| ||||| ||||||||||| |||| ||||| || |||||||||||||    
T  16766777 cgtgtccgacaccgggacacgcctaatccgaagaa-tgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 13789134 - 13789273
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||| | |||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||           || || |||||||||| ||||    
T  13789134 gacacggacatcgacacgtcgacacagctaaatttttaaaaaaatcataaaatgcagtgtaattatat-----------gtatcaatgtcggacatgaca 13789222  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | ||||||||| ||||| ||||||||| |||| ||||  ||||||||||||    
T  13789223 cgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13789273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 13797753 - 13797892
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||| | |||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||           || || |||||||||| ||||    
T  13797753 gacacggacatcgacacgtcgacacagctaaatttttaaaaaaatcataaaatgcagtgtaattatat-----------gtatcaatgtcggacatgaca 13797841  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | ||||||||| ||||| ||||||||| |||| ||||  ||||||||||||    
T  13797842 cgtgtctgacatggggatacgccttattcaaggagtgttcgtgcttcatag 13797892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 17435162 - 17435329
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| |||||| ||||||||||  | ||||||||| ||||||   ||||| ||||| ||| ||| ||||||||||| | ||||| ||||  ||    
T  17435162 ctatgaagcacggatacg-acacggacactgatacgtcgacatagctaataattttaaaaaattacataattcagtgtaattacaagtgttagtgttttg 17435260  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||||||| |||  ||||| |||||||| || |||  | ||||| |||| ||||||||    
T  17435261 tcgatgtcggacacgacacgtgttcgacactgggacacgtctaatctgaaaagtgtccgtacttcatag 17435329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 8365598 - 8365448
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||| ||||   ||| | || |||||| ||| | ||||||||| | |||| |||||||||||| | ||||||||||||    
T  8365598 gacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgaca 8365499  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| ||||| ||||||||||| |||| || |||  |||||||||||||    
T  8365498 cgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 17327715 - 17327590
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    ||||||| ||||  |||| ||||||||||| |||  ||||||| |||||||||  |||||||||||      |||||||||| |||||||||| ||||||    
T  17327715 cgacacaactaagattttgagaaaatcacataatttagtgtaactatatgtgtcagtgtcgtgtcg------gacacgacacgtgtctgacacagggaca 17327622  T
Q  294 cgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||| |||| || |||| |||||||||||||    
T  17327621 cgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 280
Target Start/End: Original strand, 26562682 - 26562774
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtc 280  Q
    ||||| |||||| ||||||  ||| ||||||||||| ||| |||||||||||||||||| | |||||||||| ||||| ||||| ||||||||    
T  26562682 acacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcgaacacggcacatgtc 26562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 327
Target Start/End: Original strand, 7248379 - 7248490
Alignment:
Q  216 aaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccg 315  Q
    |||||||| ||| ||| ||||||||||||||||| ||||||||| ||| |||||| |||  |||| ||||| |||||||| |  |||| || |||| |||    
T  7248379 aaatcacataattcagggtaattatatgtgttggagtcgtgtcggtgttggacacaacatgtgtccgacaccgggacacgtcaaatccgaggagtgtccg 7248478  T
Q  316 tgcttcatagta 327  Q
    ||||||||||||    
T  7248479 tgcttcatagta 7248490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 5970174 - 5970065
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    |||||||||||||| |||   ||| | ||||||||| ||| ||||||||||| |  ||| |||||||||||| ||||||||||||||||| || ||||      
T  5970174 acacgtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacacatttccgacatc 5970075  T
Q  288 gggacacgcc 297  Q
    ||||||||||    
T  5970074 gggacacgcc 5970065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 12696304 - 12696446
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   ||| | ||||| ||| ||| ||||||||||| | ||||  ||||||||||      ||||||||||    
T  12696304 gacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtcgtgtc------ggacacgaca 12696397  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    | |||||||||| ||||||| ||||||||||| |||| | |||||||||    
T  12696398 cgtgtctgacaccgggacacaccttatccaaggagtgtctgtgcttcat 12696446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 31384940 - 31385048
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | ||||  ||||||||| | ||| ||||||||||| ||||  |||| ||||||||||| ||||||| |||| ||    
T  31384940 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtag-tgttggacacgacacgtgtcctacaccgggacacgcctaatccaaggagtgtcc 31385038  T
Q  315 gtgcttcata 324  Q
    ||||||||||    
T  31385039 gtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 32978910 - 32978842
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttca 322  Q
    |||||| |||||||||||||||||||| ||||| |||||||| || ||||||| |||| ||||||||||    
T  32978910 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgtctaatccaaggagtgtccgtgcttca 32978842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 34595182 - 34595253
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||| |||||||||| ||||||| ||| |||| || |||| |||||||||||||    
T  34595182 gtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 297
Target Start/End: Original strand, 8714000 - 8714082
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgcc 297  Q
    ||||||||| ||| ||||||||||| |  ||| |||||||||||| ||||||||||||||||| || ||||  ||||||||||    
T  8714000 aaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacacgacacatttccgacatcgggacacgcc 8714082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 8931669 - 8931561
Alignment:
Q  187 aacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacac 286  Q
    |||||| |||||||||||||  ||| ||||||| ||| ||| |||| ||||||||||||| | |||||||||| |||| ||  |||||||| ||  ||||    
T  8931669 aacacgccgacacagctaaaaatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtcagatgcgacacatatccaacac 8931570  T
Q  287 ggggacacg 295  Q
    || ||||||    
T  8931569 ggagacacg 8931561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 4877991 - 4878061
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||||||||||||||||||| |||||  |||||||||| |||| || |||| |||||||||||||    
T  4877991 gtgtcggtgtcggacacgacacatgtccgacac-aggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 4388088 - 4388162
Alignment:
Q  198 acagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacga 272  Q
    ||||| || ||||||||||||||||| ||| ||| ||||||||||||||  |||||||| || |||| |||||||    
T  4388088 acagccaatttttttagaaaatcacataatccagggtaattatatgtgtcagtgtcgtggcggtgtctgacacga 4388162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 5626798 - 5626696
Alignment:
Q  157 ctatgaagcacagatacggacacggacacca-----acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtg 251  Q
    ||||| ||||| ||||||||||||||||| |     ||||| ||||||| |||| ||||||||||||||||  | | |||||||| ||||||||| ||||    
T  5626798 ctatgcagcacggatacggacacggacacgacactgacacgccgacacaactaatttttttagaaaatcacttagttcagtgtaaatatatgtgtcggtg 5626699  T
Q  252 tcg 254  Q
    |||    
T  5626698 tcg 5626696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 9522911 - 9523001
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaa 305  Q
    ||||||||| ||| ||||||||||| | |||| ||||| |||||| |||||||  |||||| |||| ||||| | ||||||||| ||||||    
T  9522911 aaaatcacataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcggatccgacacgtgtccgacaccgagacacgcctaatccaa 9523001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 9629401 - 9629514
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtc-gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    ||||||||||| ||| || ||||||||||||||| |||||| |||||| |||||||||| |||  |||| ||||| | |||||| || |||| || ||||    
T  9629401 agaaaatcacataattcaatgtaattatatgtgtcggtgtcggtgtcg-tgtcggacacaacatgtgtccgacactgagacacgtctaatccgaggagtg 9629499  T
Q  312 cccgtgcttcatagt 326  Q
     || |||||||||||    
T  9629500 tccatgcttcatagt 9629514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 17841686 - 17841604
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaatta 239  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||||||||   ||| | ||||||||| |||  ||||||||||    
T  17841686 ctatgaagcactgatacggacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 17841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 258
Target Start/End: Complemental strand, 9025535 - 9025490
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtc 9025490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 28152146 - 28152219
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagta 327  Q
    |||||| ||||||||||||||| |||| ||||| |||||| |||| |||| || ||||  ||||||||||||||    
T  28152146 gtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatagta 28152219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 4388151 - 4388199
Alignment:
Q  277 tgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||| ||||||||||||||| ||||||| | |||||||||||    
T  4388151 tgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcatag 4388199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 7086775 - 7086858
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||| |||||| |||||||| ||| |||||   ||| ||||||||||| |||  ||||||||||||||||| ||||| |||||    
T  7086775 gacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 8777052 - 8776973
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||||||||  ||||| ||||||| ||||   ||| | ||||||||||||| ||||||||||| | ||||||||||||    
T  8777052 gacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcg 8776973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 9027158 - 9027241
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    |||||||||||  ||||| |||||| |||||   ||| ||| ||||||| ||| | |||||||||||||||| |||||||||||    
T  9027158 gacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcgtgtc 9027241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 20576658 - 20576623
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtc 264  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20576658 cagtgtaattataagtgttggtgtcgtgtcgatgtc 20576623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 28715343 - 28715414
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||| |||  ||||| ||||||||||| || | |||||||  ||||||||||||    
T  28715343 gtgtcggtgtcggacacgacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 9617452 - 9617510
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacg 271  Q
    ||||||||||| ||| || ||||||||||||||| ||||||||  || |||||||||||    
T  9617452 agaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtcggacacg 9617510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 274
Target Start/End: Original strand, 10294144 - 10294186
Alignment:
Q  232 tgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||||||| |||||||||| | ||||||||||||||    
T  10294144 tgtaattatatgtgtcggtgtcgtgttggtgtcggacacgaca 10294186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 32839687 - 32839571
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattat---atgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgaca-cggggacacgccttatccaagaa 308  Q
    ||||||||||| ||| |||| |||||||   ||||||||||||| |||   ||||||||| ||||  ||||| ||| | ||||||||||| |||| ||||    
T  32839687 agaaaatcacataatccagtataattatcatatgtgttggtgtcatgttagtgtcggacaagacatgtgtctaacaaccgggacacgcctaatccgagaa 32839588  T
Q  309 gtgcccgtgcttcatag 325  Q
    ||| | |||||||||||    
T  32839587 gtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 5970217 - 5970188
Alignment:
Q  157 ctatgaagcacagatacggacacggacacc 186  Q
    ||||||||||||||||||||||||||||||    
T  5970217 ctatgaagcacagatacggacacggacacc 5970188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 7151432 - 7151473
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||| |||  |||||||||||||||||||||||||||    
T  7151432 aaaatcacataattaagtgtaattatatgtgttggtgtcgtg 7151473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 7265634 - 7265593
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Complemental strand, 9195795 - 9195734
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||| ||| |||  ||||||||||||||||| |||||||||| | |||| |||||||||    
T  9195795 agaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtctgacacgaca 9195734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 9658859 - 9658936
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgt 252  Q
    |||||||||||  ||||| |||||| |||||   ||| ||||||||||| ||| |||||||||||||| ||| |||||    
T  9658859 gacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgt 9658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 14155280 - 14155239
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| |||||||||| |||| ||||||||||||||    
T  14155280 agaaaatcacataatacagtgtgattacatgtgttggtgtcg 14155239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 32511707 - 32511666
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||    
T  32511707 agaaaatcacataattcagtgtaattataagtgttggtgtcg 32511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 7377978 - 7378038
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||| ||||||  ||| ||||||||||| ||| || ||||||||||||||| |||||||    
T  7377978 cgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcg 7378038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 7996377 - 7996325
Alignment:
Q  270 cgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttca 322  Q
    |||||| ||||| |||||||||||||||| ||||||| |||  ||||||||||    
T  7996377 cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 7996325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 8022424 - 8022476
Alignment:
Q  270 cgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttca 322  Q
    |||||| ||||| |||||||||||||||| ||||||| |||  ||||||||||    
T  8022424 cgacacgtgtctaacacggggacacgcctaatccaaggagtctccgtgcttca 8022476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 10889053 - 10888969
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    |||||||||||| |||| | ||||| |||||   ||| | ||||||||| |||  ||||| |||||||||||| |||||||||||    
T  10889053 gacacggacaccgacacatagacaccgctaataatttgataaaatcacataatttagtgtgattatatgtgttagtgtcgtgtcg 10888969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Complemental strand, 11424731 - 11424691
Alignment:
Q  234 taattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||||||||||||| |||||| ||||| ||||||||    
T  11424731 taattatatgtgttggtgttgtgtcggtgtcgaacacgaca 11424691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 28152062 - 28152157
Alignment:
Q  158 tatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||||||| |||| ||||||||||||  ||||| ||||| |||| |||  |||  ||||||||| ||| ||||||||||| | |||| |||||||    
T  28152062 tatgaagcacggatatggacacggacactgacacgccgacaaagct-aataatttgaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 31061081 - 31061033
Alignment:
Q  152 atatactatgaagcacagatacggacacggacaccaacacgtcgacaca 200  Q
    |||| ||||||| |||||||||  |||||||||| ||||||||||||||    
T  31061081 atatcctatgaaacacagatacacacacggacactaacacgtcgacaca 31061033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 34446644 - 34446692
Alignment:
Q  279 tctgacacggggacacgccttatccaagaagtgcccgtgcttcatagta 327  Q
    |||||||| ||||||| ||| ||||||| |||| |||||||||||||||    
T  34446644 tctgacactgggacacacctaatccaaggagtgtccgtgcttcatagta 34446692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 36096441 - 36096303
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  36096441 acacgccgacacagctaaattttttagaaaatcacaaaatgcagtgtaattatatttgtcggtgtcgtgtcgatgtcggacacgacacgtgtctgacacg 36096342  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||| ||||  |||| ||||||||||||||    
T  36096341 gggacacgccttaaccaaagagtgtccgtgcttcatagt 36096303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 34785061 - 34784911
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||  ||||||| |||| ||||||||||||||||| |||  ||||||||||||||||| |||||||||||| | ||||||||||||    
T  34785061 gacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacgaca 34784962  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | ||||||||||||||||||||||||| | || |||| | |||||||||||    
T  34784961 cctgtctgacacggggacacgccttattcgaggagtgtctgtgcttcatag 34784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 18054883 - 18054784
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaatttttt-agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgac 273  Q
    |||| ||||||| |||||||||||||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||    
T  18054883 gacagggacaccgacacgtcgacacagctaattttttttagaaaatcacaaactgcagtgtaattatatgtgttggtgtcgtgtcggtgtcgaacacgac 18054784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 24009265 - 24009414
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| ||||||||||||       ||||| |||||||||||| ||||||||||||||||||||| |||||||| | ||||||| ||||||       
T  24009265 ctatgaagcacggatacggacacg-------acacggcgacacagctaatttttttagaaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtc--- 24009353  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
            ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24009354 --------ggacacgacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 24009414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 41843403 - 41843566
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| |||| | ||||||||||  ||||| ||||| | ||||||||||||| |||||||| ||| | || ||||||||||||| ||||| |      
T  41843403 ctatgaagcacggatatgaacacggacactgacacgccgacaaaactaaattttttaggaaatcacataattcggtataattatatgtgtcggtgttg-- 41843500  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
        |||||||| |||||| |||| ||||||||||||||| |||||| || |||| | ||||||||||||    
T  41843501 ----tgtcggacgcgacacgtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatagt 41843566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 325
Target Start/End: Original strand, 37419704 - 37419873
Alignment:
Q  157 ctatgaagcacagatacggacac-ggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgt 255  Q
    ||||||||||| ||||||||||| ||||||  ||||| |||||  || ||   ||| | ||||||||||||| ||||||||||| | |||  ||||||||    
T  37419704 ctatgaagcacggatacggacaccggacactgacacgccgacatggcaaataatttgaaaaaatcacaaaattcagtgtaattacaagtgccggtgtcgt 37419803  T
Q  256 gtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||| ||||||||||||  | |||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  37419804 gtcggtgtcggacacgatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 35056902 - 35056998
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||  |||||||| |||  || |||| |||||||||||||    
T  35056902 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 30717569 - 30717459
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | |||| | |||||||||| ||||||||||||||| |||  ||||| |||| |||||| ||||||| |||| ||    
T  30717569 aaaatcacataattcagtgtaattacaagtgtcgatgtcgtgtcgttgtcggacacgacacgtgttcgacactgggatacgcctaatccaaggagtgtcc 30717470  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  30717469 gtgcttcatag 30717459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 32749866 - 32749754
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| ||||||||| ||| ||||  ||||||||||||||||||||  ||||  |||| ||||| ||||||||||||||| ||| ||||     
T  32749866 agaaaatcacataattcagtgtaataataagtgtcagtgtcgtgtcgatgtcggacgtgacatgtgtccgacactgggacacgccttatctaaggagtgt 32749767  T
Q  313 ccgtgcttcatag 325  Q
    ||| |||||||||    
T  32749766 ccgcgcttcatag 32749754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 325
Target Start/End: Complemental strand, 11223922 - 11223793
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacac 294  Q
    |||||||||||  |||| | ||||| ||| ||| ||||||||||| | |||| |||||| ||| | ||||||||||||||| |||||||||| |||||||    
T  11223922 gacacagctaatattttgaaaaaataacataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacacgacac-tgtctgacaccgggacac 11223824  T
Q  295 gccttatccaagaagtgcccgtgcttcatag 325  Q
    |||| |||  || |||| |||||||||||||    
T  11223823 gcctaatctgaggagtgtccgtgcttcatag 11223793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 20242806 - 20242667
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||| ||||||  ||||| ||||||| |||| ||||||||||||||||| ||| ||||||||||||||           |||||| |||||||||| |||    
T  20242806 gacatggacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattatat-----------gtgtcggtgtcggacacaaca 20242718  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | ||||||||||| ||||||||||||||| |  |||| | |||||||||||    
T  20242717 cgtgtctgacacgaggacacgccttatccgaagagtgtctgtgcttcatag 20242667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 325
Target Start/End: Original strand, 26769547 - 26769641
Alignment:
Q  231 gtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||| | |||| |||||| ||||| | ||||||||||||| |||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  26769547 gtgtaattacaagtgtcggtgtcatgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||| |||| || |||| |||||||||||    
T  2438730 gtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 311
Target Start/End: Original strand, 28524418 - 28524542
Alignment:
Q  187 aacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacac 286  Q
    |||||| ||| ||||||||| ||||  | |||||||| ||| |||||||||||||||||| | ||| |||| | |||||||||| |||| ||||||||||    
T  28524418 aacacgccgatacagctaaaattttgtgcaaatcacataattcagtgtaattatatgtgtcgttgttgtgttggtgtcggacacaacacgtgtctgacac 28524517  T
Q  287 ggggacacgccttatccaagaagtg 311  Q
     |  |||||||| |||  |||||||    
T  28524518 agaaacacgcctaatctgagaagtg 28524542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 324
Target Start/End: Original strand, 44860338 - 44860449
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    |||||||| || ||| |||||||||||||||||| |||||||||| | ||| ||||||||||  |||| ||||  ||||||| ||| || | || ||||     
T  44860338 agaaaatcgcataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacacgacatgtgtccgacatcgggacacacctaattcgaggagtgt 44860437  T
Q  313 ccgtgcttcata 324  Q
    ||||||||||||    
T  44860438 ccgtgcttcata 44860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 325
Target Start/End: Complemental strand, 42511411 - 42511322
Alignment:
Q  235 aattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||||||||| ||  |||||||||| |||| |||| ||||| |||||||| || |||| || |||| |||||||||||||    
T  42511411 aattatatgtgttggtgtcgt-tcagtgtcggacacaacacgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 323
Target Start/End: Original strand, 15657844 - 15657992
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgac 273  Q
    ||||||||||| |||||| |||| || |||| | ||| || ||||||||| ||| ||||||||||| |  ||| |||||||||| |||||||||| ||||    
T  15657844 gacacggacactaacacgccgactcaactaataatttgta-aaaatcacataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggacgcgac 15657942  T
Q  274 acatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    || |||| ||| | |||||||||||  ||| || |||| || ||||||||    
T  15657943 acgtgtccgacgccgggacacgcctagtccgaggagtgtccatgcttcat 15657992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 18841024 - 18840952
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| |||| ||||||||||||||| ||||| ||||||| ||| |||| || |||| ||||||||||||||    
T  18841024 gtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagt 18840952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 27286316 - 27286253
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    |||||||||||| ||||   |||| |||||||||||||||||||||||||| ||||| ||||||    
T  27286316 agtgtaattataggtgtcaatgtcatgtcgatgtcggacacgacacatgtccgacaccgggaca 27286253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 37558939 - 37559036
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| |||||||||||||||||  ||||| |||||||||||| | ||| || ||||||||| ||| || |||||||| | |||| |||||||    
T  37558939 ctatgaagcacggatacggacacggacactgacacgccgacacagctaataatttgta-aaaatcacataattcaatgtaattacaagtgtcggtgtcg 37559036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 36756423 - 36756275
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||| |||||  ||||||||||||| ||||   ||| |  |||| ||| ||| ||||||||||||| |||| ||||||||||   ||||| |||| |||    
T  36756423 gacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacacaaca 36756324  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| ||||| |  |||||||| |||| || |||| | |||||||||    
T  36756323 catgtccgacaccgcaacacgcctaatcctaggagtgtctgtgcttcat 36756275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 38117163 - 38117095
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagtaca 329  Q
    |||||||||| |||| |||| ||||| ||||||||||| |||| ||  ||| |||||||||||||||||    
T  38117163 tgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatagtaca 38117095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 18622626 - 18622669
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||    
T  18622626 aaaatcacataattcagtgtaattatacgtgttggtgtcgtgtc 18622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 21616742 - 21616813
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    |||||||||||  ||||| |||||| |||||   ||| ||||||||||| ||| ||||||||||||||||||    
T  21616742 gacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 12668462 - 12668352
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||| ||| ||| ||||||||||||| |||| |||||||||||| | | ||| ||||||| | |||||||  ||||||| ||| || | || |||  ||    
T  12668462 aaaatgacataattcagtgtaattataagtgtcggtgtcgtgtcggtattggatacgacacgtatctgacattgggacacacctaattcgaggagtatcc 12668363  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  12668362 gtgcttcatag 12668352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 15909737 - 15909641
Alignment:
Q  156 actatgaagcacagatacggacacggacacca-------acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtg 245  Q
    |||||||||||| ||||||| ||| |||||||       ||||| ||| ||||||||| |||| ||||||| ||| ||| |||||||||||||||||    
T  15909737 actatgaagcacggatacgggcactgacaccagacactgacacgccgatacagctaaaattttgagaaaattacataattcagtgtaattatatgtg 15909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 326
Target Start/End: Complemental strand, 18889632 - 18889518
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggaca-cgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    ||||||||||| ||| ||||||||| |||||||| |||||| |||   ||||||||| |||| |||||| |||||  |||||| ||| | ||||| ||||    
T  18889632 agaaaatcacataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacaccgacgcatgtccgacacccggacacacctaacccaagtagtg 18889533  T
Q  312 cccgtgcttcatagt 326  Q
     |  |||||||||||    
T  18889532 tctctgcttcatagt 18889518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 19614212 - 19614266
Alignment:
Q  224 aaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatg 278  Q
    |||| ||||||||||||||||||  || |||||||| ||||| ||||||||||||    
T  19614212 aaattcagtgtaattatatgtgtcagtatcgtgtcggtgtcgaacacgacacatg 19614266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 28596517 - 28596587
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||| ||||||||||||||| |||| |||||  |||||| ||| |||| || |||| ||||||||||||    
T  28596517 gtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 31283991 - 31284021
Alignment:
Q  156 actatgaagcacagatacggacacggacacc 186  Q
    |||||||||||||||||||||||||||||||    
T  31283991 actatgaagcacagatacggacacggacacc 31284021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 2331812 - 2331902
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaa 305  Q
    ||||||||||| ||| ||||||| ||||  |||| |||||||||||  |||||| |||  ||| ||||||||||  |||||||||| ||||||    
T  2331812 agaaaatcacataattcagtgtatttat--gtgtcggtgtcgtgtcagtgtcgggcacagcacgtgtctgacaccaggacacgcctaatccaa 2331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 12224271 - 12224328
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    |||||| |||||||||||| || |||| ||||| ||||||||||| ||||||| ||||    
T  12224271 gtgtcggtgtcggacacgatacgtgtccgacactgggacacgcctaatccaaggagtg 12224328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 5367240 - 5367292
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaag 306  Q
    |||||| ||||||||||||||||| || ||| | ||||||||||| |||||||    
T  5367240 gtgtcggtgtcggacacgacacatatccgactccgggacacgcctaatccaag 5367292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 18054764 - 18054716
Alignment:
Q  277 tgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||  |||||||||||||||| | || |||||||||||||    
T  18054764 tgtctgacacggaaacacgccttatccaaggaatgtccgtgcttcatag 18054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 19942314 - 19942382
Alignment:
Q  255 tgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    ||||| ||||||||||| ||  |||||||||| ||||||||||| |||| || |||| || ||||||||    
T  19942314 tgtcggtgtcggacacggcatgtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 19980664 - 19980692
Alignment:
Q  157 ctatgaagcacagatacggacacggacac 185  Q
    |||||||||||||||||||||||||||||    
T  19980664 ctatgaagcacagatacggacacggacac 19980692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 175 - 327
Target Start/End: Complemental strand, 5414251 - 5414099
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||||||||  ||||||||||||||    
T  5414251 gacacggacacggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtatcggtgtcgtgtcagtgtcggacacgaca 5414152  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagta 327  Q
    | |||||||||| ||||||| ||||||||||| |||| |||||||||||||||    
T  5414151 cgtgtctgacacagggacacaccttatccaaggagtgtccgtgcttcatagta 5414099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 326
Target Start/End: Complemental strand, 46084050 - 46083919
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacac 294  Q
    ||||||||||| | |||||| |||||||| |||  ||||||||||||||||| |||||||||||  | ||||||||||||| |||||||| |||||||||    
T  46084050 gacacagctaattgttttagtaaatcacataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacgacacgtgtctgacgcggggacac 46083951  T
Q  295 gccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||||   || |||| || |||||||||||    
T  46083950 gccttataagaggagtgtccatgcttcatagt 46083919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 30982919 - 30982808
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| | | ||||||||||||| |||| |||||||||||| |||| |||||||||| |||| ||||| ||||||||||| ||||||  ||||     
T  30982919 agaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgt 30982820  T
Q  313 ccgtgcttcata 324  Q
    ||||||||||||    
T  30982819 ccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 22234929 - 22234819
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| |||||||||| ||||||| |||||||||||| |||| |||||||||| |||| |||||  ||||||  || |||| |||||||  |    
T  22234929 aaaatcacataattcagtgtaattctatgtgtcggtgtcgtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttc 22234830  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  22234829 gtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 157 - 299
Target Start/End: Original strand, 37496667 - 37496808
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    |||||||||||| | ||||||||| ||||  |||||| ||||| | ||| ||||| ||||||| ||| ||| || |||||| | | |||| ||||| |||    
T  37496667 ctatgaagcacaaacacggacacg-acactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtg 37496765  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgcctt 299  Q
    ||| || ||||||||||||||||| ||||| ||||||||||||    
T  37496766 tcgttgccggacacgacacatgtcggacaccgggacacgcctt 37496808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 325
Target Start/End: Complemental strand, 24613767 - 24613630
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||||||||||| ||||   ||| ||||||||||| ||| || ||||| || | |||| |||||| ||||| |||| |||||||||| ||||||||||     
T  24613767 acacgtcgacacaactaataatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacacc 24613668  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
     ||||||| || |||| || |||| |||||||||||||    
T  24613667 aggacacgtctaatcctaggagtgtccgtgcttcatag 24613630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 19500882 - 19500787
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||   ||||| || | | ||||||| ||||||| |||  |||||||||||||    
T  19500882 agtgtaattatatgtgatggtgtcgtgtcggtgtcggacacgacacgcctctgataccgaggcacgcctaatccaaggagtatccgtgcttcatag 19500787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 23292997 - 23292925
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| ||||||||||||||| |||| ||||| ||||||||||| |||| || |||| ||||||||||||||    
T  23292997 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagt 23292925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 19482691 - 19482798
Alignment:
Q  218 atcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtg 317  Q
    |||||| ||| | ||||||||| | ||||||||||||||||| | | ||||||||||| |||| ||||| ||||||| ||| |||| || ||||  ||||    
T  19482691 atcacataattcggtgtaattacaagtgttggtgtcgtgtcggtattggacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtg 19482790  T
Q  318 cttcatag 325  Q
    ||||||||    
T  19482791 cttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 30298910 - 30299008
Alignment:
Q  159 atgaagcacagatacggacacggacaccaacacgtcgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||| | |||  | ||||| ||| ||| ||||||||||| | |||| |||||||||    
T  30298910 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 30327778 - 30327876
Alignment:
Q  159 atgaagcacagatacggacacggacaccaacacgtcgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||| | |||  | ||||| ||| ||| ||||||||||| | |||| |||||||||    
T  30327778 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttgaaaaaaatgacataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 44132691 - 44132594
Alignment:
Q  207 ttttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaa 305  Q
    ||||||||||||||||  ||| |||| ||||||||||||| |||||||||| | ||||| |||| |||  ||||||||||  ||||||| |||||||||    
T  44132691 ttttttagaaaatcacgtaattcagtataattatatgtgtcggtgtcgtgttggtgtcgaacacaacatgtgtctgacacatggacacg-cttatccaa 44132594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 903940 - 904053
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| |||||||||||||||| |  || |||| ||| ||| ||||||||||  |||| ||||| |||||||  || ||||||||| ||     
T  903940 agaaaatcacataattcagtgtaattatatgtatcagtatcgtatcggtgttggacacgacatgtgtccgacactgggacacatctaatccaagaaatgt 904039  T
Q  313 ccgtgcttcatagt 326  Q
    || |||||||||||    
T  904040 ccttgcttcatagt 904053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 19312355 - 19312463
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    |||||||||  || ||||||||||||| || | |||||||||||| ||||||| ||||||| |||| ||||| | |||||| || |||  ||||||| ||    
T  19312355 aaaatcacatgattcagtgtaattataagtatcggtgtcgtgtcgttgtcggatacgacacgtgtccgacaccgagacacgtctaatctgagaagtgtcc 19312454  T
Q  315 gtgcttcat 323  Q
    ||| |||||    
T  19312455 gtgtttcat 19312463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 715603 - 715545
Alignment:
Q  267 acacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  715603 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 752929 - 752871
Alignment:
Q  267 acacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  752929 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 259
Target Start/End: Complemental strand, 12895211 - 12895111
Alignment:
Q  158 tatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgt 257  Q
    ||||||||||||||||||||||||||| | ||||| ||| ||||||||   ||| | ||||||||| ||| ||  ||||||| | |||| ||||||||||    
T  12895211 tatgaagcacagatacggacacggaca-cgacacgccgaaacagctaataatttgaaaaaatcacataattcaaagtaattacaagtgtcggtgtcgtgt 12895113  T
Q  258 cg 259  Q
    ||    
T  12895112 cg 12895111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 13783261 - 13783342
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    |||||||||||  ||||  |||||| ||||| | ||| |||| |||||||||| |||||||||||||||||  |||||||||    
T  13783261 gacacggacactgacacaccgacaccgctaattatttgagaagatcacaaaattcagtgtaattatatgtgccggtgtcgtg 13783342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 28964252 - 28964187
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||||||| || ||||| ||||||||||| |||| || |||| || |||||||||||    
T  28964252 tgtcggacacgacacatatccgacactgggacacgcctaatccgaggagtgtccatgcttcatagt 28964187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 29205527 - 29205587
Alignment:
Q  265 ggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||| ||||| ||||||||||| |||| || ||||  ||||||||||||    
T  29205527 ggacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 35157996 - 35157924
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| |||| |||||||||||||||  |||| || |||||| | |||| ||||||| ||||||||||||||    
T  35157996 gtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttcatagt 35157924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 8423728 - 8423657
Alignment:
Q  255 tgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||| ||||||||||||||  |||| ||||| ||||||||||| |||  ||||||| |||||| |||||||    
T  8423728 tgtcggtgtcggacacgacagctgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatagt 8423657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 38148766 - 38148655
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| |||||||||| ||  ||| | |||||||| | ||| ||||||||||| | |||||||| || ||||||||  || ||||||||     
T  38148766 agaaaatcacataattcagtgtaattttaaatgtcgatgtcgtgttggtgttggacacgacacgtatctgacactggaacacgcctattcgaagaagtgt 38148667  T
Q  313 ccgtgcttcata 324  Q
     ||| |||||||    
T  38148666 tcgtacttcata 38148655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 49431074 - 49431145
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||| ||||  |||| |||||||||||||||| || |||| || ||||| ||||    
T  49431074 gtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctttatag 49431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 12323968 - 12324038
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||| ||||||||| ||||| ||| || |||||| |||| |||||||| || |||| ||||||||||||    
T  12323968 gtgtcggtgtcggacatgacacgtgtgtggcacgggaacacaccttatccgaggagtgtccgtgcttcata 12324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 13134468 - 13134530
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacac 275  Q
    ||||||||||| |||  ||||||||||||||||| | ||||||||||| |||| |||| ||||    
T  13134468 agaaaatcacataatttagtgtaattatatgtgtcgatgtcgtgtcgacgtcgaacacaacac 13134530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 15659801 - 15659755
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    |||||||| || ||| | |||||||||||||||||||||||||||||    
T  15659801 agaaaatctcataattcggtgtaattatatgtgttggtgtcgtgtcg 15659755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 18576078 - 18576032
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    ||||||||||| ||| | ||||||||||||||||||||||| |||||    
T  18576078 agaaaatcacataattcggtgtaattatatgtgttggtgtcatgtcg 18576032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 19097904 - 19097835
Alignment:
Q  255 tgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||| ||||| ||| ||||| |||||||||||||||||||||||| ||||  |||| | |||||||||||    
T  19097904 tgtcggtgtcgaacatgacacgtgtctgacacggggacacgcctta-ccaaagagtgtctgtgcttcatag 19097835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 40613443 - 40613501
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    ||||| |||||| |||||  |||| ||||||||||| ||| ||||||||||||||||||    
T  40613443 acacgccgacaccgctaatattttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 3947877 - 3947844
Alignment:
Q  154 atactatgaagcacagatacggacacggacacca 187  Q
    |||||||||||| |||||||||||||||||||||    
T  3947877 atactatgaagctcagatacggacacggacacca 3947844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 7970537 - 7970582
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||| | ||| |||||||||||||||| |||||||||||||    
T  7970537 agaaaatcatataattcagtgtaattatatgttttggtgtcgtgtc 7970582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 23293101 - 23293072
Alignment:
Q  157 ctatgaagcacagatacggacacggacacc 186  Q
    ||||||||||||||||||||||||||||||    
T  23293101 ctatgaagcacagatacggacacggacacc 23293072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 42014965 - 42015018
Alignment:
Q  202 ctaaattttttagaaaatcaca-aaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||| |||| ||| ||||||| |||| ||||||||||||||||||||||||||    
T  42014965 ctaaaattttgagataatcacataaattcagtgtaattatatgtgttggtgtcg 42015018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 15029788 - 15029824
Alignment:
Q  218 atcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  15029788 atcacataattcagtgtaattatatgtgttggtgtcg 15029824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 195 - 326
Target Start/End: Complemental strand, 34451096 - 34450960
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcga-----tgtcggacacgacacatgtctgacacggg 289  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||      ||||||||||||||| |||||||||||||    
T  34451096 gacacagctaattttttttgaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtgtcgtgtcggtgtcggacacgacacgtgtctgacacggg 34450997  T
Q  290 gacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  34450996 gacacgccttatccaaggagtgtccgtgcttcatagt 34450960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 212 - 325
Target Start/End: Complemental strand, 26902217 - 26902104
Alignment:
Q  212 tagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    |||||||||||| ||| |||||||||||||||||| |||||||| |   ||||||||||||||| |||||| |||||||||||||||||||  || ||||    
T  26902217 tagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtatgagtgtcggacacgacacgtgtctggcacggggacacgccttatctgaggagtg 26902118  T
Q  312 cccgtgcttcatag 325  Q
     |||||||||||||    
T  26902117 tccgtgcttcatag 26902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 43737877 - 43737752
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| || |||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||           |||||||||  |||||||||||    
T  43737877 acacgccggcacagctaaattttcttgaaaatcacaaaatacagtgtaattatatgtgtcggtgtcg-----------gacacgacaggtgtctgacacg 43737789  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||| |||||||||||||| |||| ||||||||||||    
T  43737788 gggatacgccttatccaaggagtgtccgtgcttcata 43737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 18964154 - 18964309
Alignment:
Q  172 acggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttg--gtgtcgtgtcgatgtcggaca 269  Q
    |||||||| |||||  ||||||| | ||| |||| ||||||||||||||||| ||| || ||||||||||||||| |  |||||||||||  || | |||    
T  18964154 acggacactgacactgacacgtcaagacaactaatttttttagaaaatcacataattcaatgtaattatatgtgtcggtgtgtcgtgtcggcgttgaaca 18964253  T
Q  270 cgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||| |||||| |||||||||||||| || |||| | |||||||||||    
T  18964254 cgacacctgtctaacacggagacacgccttatccgaggagtgtctgtgcttcatag 18964309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 29510383 - 29510233
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   ||| | ||||||||||||| |||| |||||| | |||| ||||| |||||| |||||||||||||     
T  29510383 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaagtgtcggtgtagtgtcggtgtcggacacgacg 29510284  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| ||||| ||||||| ||| |||| || |||| |||||||||||||    
T  29510283 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 213 - 326
Target Start/End: Original strand, 11803277 - 11803390
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||| | ||| ||| |||||||||||| ||||| || ||||| || |||| || ||||     
T  11803277 agaaaatcacataattcagtgtaattatatgtgttggtgttgtgttggtgttggatacgacacatgtccgacacaggtacacgtctaatccgaggagtgt 11803376  T
Q  313 ccgtgcttcatagt 326  Q
    ||||||||||||||    
T  11803377 ccgtgcttcatagt 11803390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 325
Target Start/End: Complemental strand, 15816205 - 15816058
Alignment:
Q  178 acggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacat 277  Q
    ||||||||  ||||| ||||||| ||||   ||| | ||||||||| |||  |||||||||||| |||| |||||||||| | |||||||||||||||      
T  15816205 acggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacacgacacga 15816106  T
Q  278 gtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
     || ||||| ||||||||||| |||| ||||||| |||||||||||||    
T  15816105 atccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 22651956 - 22652106
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   ||| | ||||||||| ||| || | |||||| | |||| |||||||||||| ||||||||||||||    
T  22651956 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgaca 22652055  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
      |||| ||||| |||||||| || |||| || |||| |||||||||||||    
T  22652056 tgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 29447176 - 29447040
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||||||||||| ||||   ||| ||||||||||| ||| || ||||| || | |||| |||||| ||||| ||||||||||||||  ||||||||||     
T  29447176 acacgtcgacacaactaataatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacacc 29447077  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcata 324  Q
     |||||||||| |||| || |||| ||||||||||||    
T  29447076 aggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 29447479 - 29447574
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||||||||||||||||||| |||| |||||||||  |||| ||||| |||||| | || |||  || |||| |||||||||||||    
T  29447479 agtgtaattatatgtgttggtgtcgtgtcggtgtcagacacgacatgtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatag 29447574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 231 - 324
Target Start/End: Complemental strand, 24205842 - 24205749
Alignment:
Q  231 gtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||| |||||||||||||| |||||| ||||| |||| || |||||||||||| || |||||||| |||| || |||| ||||| ||||||    
T  24205842 gtgtaataatatgtgttggtgttgtgtcggtgtcgaacacaacgcatgtctgacaccggaacacgcctaatccgaggagtgtccgtgtttcata 24205749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 36934650 - 36934747
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacga 272  Q
    ||||||||||| ||||||||||||| |||||   ||  | ||||||||| ||| || |||||||||||||||||| ||||| ||||| ||||||||||    
T  36934650 gacacggacactaacacgtcgacaccgctaataattcgaaaaaatcacataattcattgtaattatatgtgttggcgtcgtttcgatatcggacacga 36934747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 2572135 - 2572016
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||| ||| ||||||||||||| ||||   ||| | ||||||||| |||  |||||||||| | |||| |||||||||||  ||||||||||||||    
T  2572135 gacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgaca 2572036  T
Q  275 catgtctgacacggggacac 294  Q
    | |||| || || |||||||    
T  2572035 cgtgtccgataccgggacac 2572016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 3951547 - 3951476
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||| |||||||||| ||||||||||||| |||||||| ||||||| |||  |||||||||||||    
T  3951547 gtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 14634206 - 14634127
Alignment:
Q  189 cacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggac 268  Q
    ||||||||||| |||||   ||| ||||||| | | ||| |||||||||||||| |||||||||||||||||||||||||    
T  14634206 cacgtcgacaccgctaacaatttaagaaaattatataattcagtgtaattatatttgttggtgtcgtgtcgatgtcggac 14634127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 4673464 - 4673354
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||| ||||| ||||||||||| | || |  ||||| ||| ||||||||||||||| ||| || ||||| || |||||||| ||||||| |||| |     
T  4673464 aaaatcataaaattcagtgtaattacaagtatcagtgtcttgttgatgtcggacacgacgcatatccgacaccggaacacgcctaatccaaggagtgtct 4673365  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  4673364 gtgcttcatag 4673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 6065696 - 6065586
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| |||||||| |||||| |||  |   | ||||||| ||||||||||||||||||||| ||||| || |||||| | || |||| |||| ||    
T  6065696 aaaatcacataatacagtataattacatgaatcaatatcgtgtcaatgtcggacacgacacatgtccgacaccggaacacgcataattcaaggagtgtcc 6065597  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  6065596 gtgcttcatag 6065586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 254
Target Start/End: Complemental strand, 36450851 - 36450754
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| |||||||||||||||||  ||||| ||||||| ||||   ||| | ||||||||| ||| ||||||||||| | |||| |||||||    
T  36450851 ctatgaagcacggatacggacacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaattacaagtgtaggtgtcg 36450754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 14134661 - 14134757
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtc 253  Q
    ||||||||||| ||||||||||| |||||  |||||||||||   ||||   ||| ||||||||||| ||| |||||||||||||| ||| ||||||    
T  14134661 ctatgaagcacggatacggacaccgacacggacacgtcgacaatactaataatttgagaaaatcacataattcagtgtaattatatatgtcggtgtc 14134757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 33405395 - 33405324
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||||||||||||||  ||||||| || ||||||  |||| ||||||| |||||    
T  33405395 gtgtcggtgtcggacacgacacatgtctgacacctggacacggctaatccaatgagtgtccgtgctccatag 33405324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 11944685 - 11944795
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||  |||||||||||||||||| |||||||||| ||||||  ||||||||  | || ||||| | ||||||||| |||| |  ||||  |    
T  11944685 aaaatcacataactcagtgtaattatatgtgtcggtgtcgtgttgatgtcatacacgacatgtatccgacaccgagacacgcctaatccgatgagtgttc 11944784  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  11944785 gtgcttcatag 11944795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 280
Target Start/End: Complemental strand, 24362281 - 24362175
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgt-cggacacgac 273  Q
    ||||| |||||| ||||| |||||| |||||   ||| ||| ||||||| ||| ||||||||||||||||||   |||||||||| ||| ||||||||||    
T  24362281 gacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattatatgtgtcaatgtcgtgtcggtgtccggacacgac 24362182  T
Q  274 acatgtc 280  Q
    || ||||    
T  24362181 acgtgtc 24362175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 21465449 - 21465542
Alignment:
Q  232 tgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||| | ||||||||||||||||  ||||||||||||||| ||||  |||| |||| |||||| ||   || |||| |||||||||||||    
T  21465449 tgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtccaacacagggatacgcctaatttgaggagtgtccgtgcttcatag 21465542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 25172720 - 25172680
Alignment:
Q  232 tgtaattatatgtgttggtgtcgtgtcgatgtcggacacga 272  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  25172720 tgtaattatatgtgtcggtgtcgtgtcaatgtcggacacga 25172680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 34897068 - 34897136
Alignment:
Q  178 acggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    ||||||||  |||||||||||| |||||   ||| ||||||||||| ||| ||||||||||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 34897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 11927125 - 11927066
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    ||||||||| ||| |||||||||||||||||| |||||||||| | ||||  ||||||||    
T  11927125 aaaatcacataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcatacacgaca 11927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 3025606 - 3025668
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    ||||||||||||||| |||||||||| | |||||| || |||| || |||| |||||||||||    
T  3025606 tgtcggacacgacacgtgtctgacactgtgacacggctaatccgaggagtgtccgtgcttcat 3025668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 926799 - 926730
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||| |||||| |||| ||||| |||||| || |||||| || |||| |||||||||||    
T  926799 gtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttcat 926730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 3951597 - 3951544
Alignment:
Q  194 cgacacagctaaattttttagaaaa-tcacaaaatacagtgtaattatatgtgt 246  Q
    |||||||||||||||||| | |||| ||||||||| ||||||| ||||||||||    
T  3951597 cgacacagctaaatttttaaaaaaaatcacaaaatgcagtgtacttatatgtgt 3951544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 4122271 - 4122182
Alignment:
Q  232 tgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttc 321  Q
    ||||||||||||||| ||||| ||||| |||||  ||||||||| |||  ||||| || ||||| || ||||||  |||| |||||||||    
T  4122271 tgtaattatatgtgtcggtgttgtgtcaatgtcaaacacgacacgtgttggacaccggaacacgtctaatccaaagagtgtccgtgcttc 4122182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 4786379 - 4786338
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 5813640 - 5813684
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgcct 298  Q
    |||||| ||||||||||||||| |||| ||||| |||||||||||    
T  5813640 gtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcct 5813684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 28385032 - 28384964
Alignment:
Q  216 aaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacg-acacatgtctga 283  Q
    ||||| || ||| |||||||||||||||||| |||||| ||||  |||| |||||| ||||||||||||    
T  28385032 aaatctcataattcagtgtaattatatgtgtcggtgtcatgtcagtgtcagacacgtacacatgtctga 28384964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 180 - 324
Target Start/End: Complemental strand, 6070 - 5926
Alignment:
Q  180 ggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgt 279  Q
    ||||||| ||||| ||| ||| |||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||| ||||| ||||||||| |||    
T  6070 ggacaccgacacgccgatacatctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgtatcggtgtcgaacacgacacgtgt 5971  T
Q  280 ctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||| | ||||||||||||||||| |||| |||||| |||||    
T  5970 ctgacacagagacacgccttatccaaggagtgtccgtgcctcata 5926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 13845614 - 13845465
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| ||||||||||||||||||        ||||||| ||||||||||||||||||||||||| ||||||||||||||           |||    
T  13845614 ctatgaagcacggatacggacacggacacc--------gacacagttaaattttttagaaaatcacaaaatgcagtgtaattatat-----------gtg 13845534  T
Q  257 tcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||| |||||||||||| || |||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  13845533 tcggtgtcggacacgagacgtgtctgacacggagacacgccttatccaaggagtgtccgtgcttcatag 13845465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 14209079 - 14209243
Alignment:
Q  160 tgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    |||||||| ||| ||||||| ||||| | |||| ||||||| ||||   ||||| ||||||||| ||| ||||||||||| | ||||  |||||||||||    
T  14209079 tgaagcacggatgcggacacagacacga-cacgccgacacaactaataattttaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcg 14209177  T
Q  260 atgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
     ||||||||||||||| |||  ||||  |||| || ||| |||||||||||| |||||||||||||    
T  14209178 gtgtcggacacgacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcatag 14209243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 4987357 - 4987222
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| ||||||||||||   ||| | ||||||||| ||| ||||||||||| | ||||||||| ||||||| ||| ||||||||||| |||| |||||     
T  4987357 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacacc 4987258  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    ||||||||||| |||| || |||| |||| ||||||    
T  4987257 gggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 34185162 - 34185051
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | |||| ||||||||||| |||||||||| ||||  |||| ||||| ||||||||||| |||| || |||| ||    
T  34185162 aaaatcacacaattcagtgtaattacaagtgtcggtgtcgtgtccatgtcggacaagacatgtgtccgacaccgggacacgcctaatccgaggagtgtcc 34185063  T
Q  315 gtgcttcatagt 326  Q
    ||||||||||||    
T  34185062 gtgcttcatagt 34185051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 325
Target Start/End: Complemental strand, 41961673 - 41961579
Alignment:
Q  231 gtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||| | |||| |||||||||||| | ||||||||||||| |||| ||||| ||||||||||| |||| ||||||| |||||||||||||    
T  41961673 gtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 255
Target Start/End: Original strand, 14028006 - 14028067
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgt 255  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  14028006 cgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcgt 14028067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 14216872 - 14217021
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||||||||||| ||||   ||||| || |||| | ||| ||||||||||| | ||||  |||||||||   ||||||||||||||    
T  14216872 gacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgaca 14216971  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    | |||  ||||| ||||||| ||| |||| ||||||| ||||||||||||    
T  14216972 cgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 324
Target Start/End: Original strand, 14223001 - 14223150
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||||||||||| ||||   ||||| || |||| | ||| ||||||||||| | ||||  |||||||||   ||||||||||||||    
T  14223001 gacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacacgaca 14223100  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    | |||  ||||| ||||||| ||| |||| ||||||| ||||||||||||    
T  14223101 cgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 326
Target Start/End: Original strand, 35222986 - 35223058
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||| ||||||||| ||||| |||||||||||||||||||| |||||| || |||| ||||||||||||||    
T  35222986 gtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttcatagt 35223058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 8039860 - 8039793
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgc 296  Q
    |||||||||||||||||| |||||||||||| ||||||||| || ||||||| ||||| |||||||||    
T  8039860 cagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacatgagacatgtccgacaccgggacacgc 8039793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 20503513 - 20503584
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||| |||| || |||| |||||||||||||    
T  20503513 gtgtcggtgttggacacgacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 321
Target Start/End: Original strand, 11665964 - 11666070
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| |||  ||||||||||||||||| |||||||||| |||||  |||||||||| ||||||| |  || |||||||| || |||| |||| ||    
T  11665964 aaaatcacacaatttagtgtaattatatgtgtcggtgtcgtgttgatgttagacacgacacgtgtctgatatcggaacacgcctaattcaaggagtgtcc 11666063  T
Q  315 gtgcttc 321  Q
    |||||||    
T  11666064 gtgcttc 11666070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 25064929 - 25065038
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| |||  |||||||||||  |||||||| |||||| | ||||||||||||||| |||||||||| ||||||||  |||||| || ||||  |    
T  25064929 aaaatcacataatttagtgtaattat--gtgttggtatcgtgttggtgtcggacacgacacgtgtctgacaccgggacacggtttatccgaggagtgttc 25065026  T
Q  315 gtgcttcatagt 326  Q
    ||||| ||||||    
T  25065027 gtgctccatagt 25065038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 16192791 - 16192728
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacaca 276  Q
    ||||||| ||| ||| |||||||||||||||||||| |||||||||| |||| |||||||||||    
T  16192791 agaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacacgacaca 16192728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 325
Target Start/End: Complemental strand, 40993432 - 40993275
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgt 255  Q
    ||||||||||| |||||||||||| ||||  |||| ||||||| ||||| | |||  | ||||||||| ||| ||||||||||||||           ||    
T  40993432 ctatgaagcacggatacggacacg-acacggacacctcgacaccgctaataatttaaaaaaaatcacataattcagtgtaattatat-----------gt 40993345  T
Q  256 gtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||| |||||||||||||||||||| ||||| ||||||||||| |||| || |||| || ||||||||||    
T  40993344 gtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 212 - 308
Target Start/End: Original strand, 2941575 - 2941660
Alignment:
Q  212 tagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaa 308  Q
    ||||||||||||||||||||||||||||||||||| ||||||           ||||||||||| ||||||||| ||||| | ||||||||||||||    
T  2941575 tagaaaatcacaaaatacagtgtaattatatgtgtcggtgtc-----------ggacacgacacgtgtctgacatggggatatgccttatccaagaa 2941660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 16789032 - 16789106
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggg 289  Q
    ||||||| | ||| ||||||||||||| ||||||||||||||||  ||||||||| ||||||||||  |||||||    
T  16789032 aaaatcatataattcagtgtaattataagtgttggtgtcgtgtcagtgtcggacatgacacatgtccaacacggg 16789106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 29508505 - 29508567
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||||||||||||| ||| ||||| |||||||| || |||||||||||| |||||||||||    
T  29508505 tgtcggacacgacacacgtccgacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 49651825 - 49651716
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| || |||||||| | |||| ||||||||||||    |||||||||||||| || ||||| ||||||| ||| |||| ||||||| ||    
T  49651825 aaaatcacataattcactgtaattacaagtgtcggtgtcgtgtcggac-cggacacgacacatatccgacaccgggacacacctaatccgagaagtgtcc 49651727  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  49651726 gtgcttcatag 49651716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 323
Target Start/End: Original strand, 13806269 - 13806363
Alignment:
Q  228 acagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    ||||| ||||||||||||| |||||||||||| |||  ||||| ||||||| | ||| | ||||||||||| |||| || |||| |||||||||||    
T  13806269 acagtataattatatgtgtcggtgtcgtgtcggtgttagacacaacacatgaccgaccccgggacacgcctaatccgag-agtgtccgtgcttcat 13806363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 55401123 - 55401194
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||||| |||| ||||| | ||||||||| |||| || |||| |||||||||||||    
T  55401123 gtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 25948926 - 25948882
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||||    
T  25948926 aaaatcacataattcagtgtaattataagtgttggtgtcgtgtcg 25948882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 14832119 - 14832202
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgcct 298  Q
    ||||||||| ||  || |||||||| | ||||  ||||||||||| | ||||||||||||| |||| ||||| |||||||||||    
T  14832119 aaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgggacacgcct 14832202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 25093482 - 25093561
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||| ||||| |||||| |||||| | |||   ||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  25093482 gacactgacactaacacgccgacactgttaatgatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 25093561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 10690303 - 10690214
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatcc 303  Q
    ||||||||||| ||| |||||||||||||| ||| ||| | || | | |||||||||| |||| |||||||||||| ||||| ||| ||||    
T  10690303 agaaaatcacataattcagtgtaattatatttgtcggtattgtttag-tgtcggacacaacacgtgtctgacacggcgacacacctaatcc 10690214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 11313841 - 11313795
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    ||||||||||| |||  |||||||||||||||||| |||||||||||    
T  11313841 agaaaatcacataatttagtgtaattatatgtgttagtgtcgtgtcg 11313795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 15314915 - 15314873
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgt 257  Q
    ||||||||| |||  ||||||||||||||||||||||||||||    
T  15314915 aaaatcacataatttagtgtaattatatgtgttggtgtcgtgt 15314873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 15796333 - 15796223
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||| | ||| ||||||||||| |  ||| |||||||||| | |||||||||| |||| ||||  |||| || |||||||| ||||||  ||||  |    
T  15796333 aaaatcatataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacacaacacgtgtccaacaccggaacacgcctaatccaaagagtgttc 15796234  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  15796233 gtgcttcatag 15796223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 28918062 - 28918120
Alignment:
Q  265 ggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    ||||||||||| |||| ||||| ||||||||||| ||||||| |||| || ||||||||    
T  28918062 ggacacgacacgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 35222931 - 35222989
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    ||||| ||||||| ||||  |||||||||||||||| ||| || |||||||||||||||    
T  35222931 acacgccgacacaactaacatttttagaaaatcacataattcaatgtaattatatgtgt 35222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 8789561 - 8789489
Alignment:
Q  254 gtgtcgatgtcggacacgacaca--tgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||| ||||||||||||||||  |||| ||||| | ||||||||| |||| || |||| ||||||||||||    
T  8789561 gtgtcggtgtcggacacgacacacatgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 10955000 - 10955049
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatcc 303  Q
    |||||| ||||||||||||||| |||| ||||| ||||||||||| ||||    
T  10955000 gtgtcggtgtcggacacgacacgtgtccgacactgggacacgcctaatcc 10955049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 16000008 - 15999951
Alignment:
Q  267 acacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||||| |||| ||||| ||||||||||| ||||||| |||| |||||| |||||    
T  16000008 acacgacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcata 15999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 27505245 - 27505370
Alignment:
Q  194 cgacacagctaa-attttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggac 292  Q
    |||||||||||| | |||||| ||||||||| |||  |||||||||| | |||| |||||||||||       |||||||||| |||| ||||| |||||    
T  27505245 cgacacagctaataattttta-aaaatcacataattaagtgtaattacaagtgtcggtgtcgtgtct------gacacgacacgtgtccgacaccgggac 27505337  T
Q  293 acgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| |||| || |||| |||||||||||||    
T  27505338 atgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 13414468 - 13414528
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||| | |||| ||||||||||||| | ||| || ||||||||||||||| |||||||    
T  13414468 cgacacaaccaaatgttttagaaaatcaaataattcaatgtaattatatgtgtcggtgtcg 13414528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 15864887 - 15864950
Alignment:
Q  261 tgtcggacac-gacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||||||| ||||| ||||||||||||| |||||||| ||||||  |||| ||||||||||||    
T  15864887 tgtcggacaccgacacgtgtctgacacggg-acacgcctaatccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 18426917 - 18426945
Alignment:
Q  157 ctatgaagcacagatacggacacggacac 185  Q
    |||||||||||||||||||||||||||||    
T  18426917 ctatgaagcacagatacggacacggacac 18426945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 37077320 - 37077488
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| ||||  ||||||||||   ||||| |||||| | |||   ||| |||| || ||| ||| || || ||| ||||||||   |||| ||    
T  37077320 ctatgaagcacggataaagacacggacagtgacacgccgacaccgataataatttgagaatataacataattcaatggaatcatatgtgtcattgtcatg 37077419  T
Q  257 tcgatgtcggacacg-acacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||| ||||| ||||| || |||||| ||||||||||||| ||| ||||||| | || ||||||||||||    
T  37077420 tcggtgtcgtacacggacgcatgtccgacacggggacacacctaatccaaggaatgtccgtgcttcata 37077488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 45451521 - 45451557
Alignment:
Q  155 tactatgaagcacagatacggacacggacaccaacac 191  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  45451521 tactatgaagcacggatacggacacggacacgaacac 45451557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 55212977 - 55213092
Alignment:
Q  209 ttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaa 308  Q
    ||||| ||||||||| |||  |||| ||||| | |||| ||||| |||||| |||||| ||| |||| |||| ||||| | ||||||| | |||||||||    
T  55212977 ttttaaaaaatcacataatttagtgcaattacaagtgtcggtgt-gtgtcggtgtcgggcacaacacgtgtccgacaccgagacacgcataatccaagaa 55213075  T
Q  309 gtgcccgtgcttcatag 325  Q
    ||  ||||||| |||||    
T  55213076 gtatccgtgctacatag 55213092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 24339635 - 24339772
Alignment:
Q  188 acacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacg 287  Q
    ||||| ||||||||||||   ||| | ||||||||| ||| ||||||||||| | |||| |||||||||||| ||||||||||||||| | || |||||     
T  24339635 acacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacacc 24339734  T
Q  288 gggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||| |||| || ||||||||||||||||||    
T  24339735 gggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 157 - 286
Target Start/End: Original strand, 32308082 - 32308211
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    |||||||||||| ||||| ||| ||||||  ||||| |||||| |||||   ||| ||||||||||| ||| |||||||||| |||||||  ||||||||    
T  32308082 ctatgaagcacaaatacgaacatggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattgtatgtgtcagtgtcgtg 32308181  T
Q  257 tcgatgtcggacacgacacatgtctgacac 286  Q
    ||| ||| |||||||||||||||| |||||    
T  32308182 tcggtgttggacacgacacatgtccgacac 32308211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 21880200 - 21880271
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||||||||||||||||||| |||||  |||||||||| |||| ||||||| |||||||||||||    
T  21880200 gtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| |||| |||||||||| |||| ||||| ||||||||||| |||| ||||||| |||||||||||||    
T  598256 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 2334270 - 2334380
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| |||  |||||||||| | |||| |||||||||||| |||||||||||||||||||| ||||| |  ||||| || |||| || |||| ||    
T  2334270 aaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtcg-tgtcggacacgacacatgtccgacactgaaacacgtctaatccgaggagtgtcc 2334368  T
Q  315 gtgcttcatagt 326  Q
    ||| ||||||||    
T  2334369 gtgtttcatagt 2334380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 18213044 - 18212973
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||| ||||||||||||| | | ||||||||||||||||||||||||| || |||| | |||||||||||    
T  18213044 gtgtcggtgtcggacacgacccctttctgacacggggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 19206030 - 19206141
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||||||||| |||||| |||||   ||| ||||||||||| ||| || | ||||||||||||| |||||| ||| | |||| || | ||||    
T  19206030 gacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtcttgttggtgtcagagatgaca 19206129  T
Q  275 catgtctgacac 286  Q
    ||| ||||||||    
T  19206130 catatctgacac 19206141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 39138451 - 39138541
Alignment:
Q  202 ctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttat 301  Q
    |||||||||||||||||||||| ||| ||||||||||||||            ||||| |||||||||||| |||||||| |||||||||||||||||||    
T  39138451 ctaaattttttagaaaatcacataattcagtgtaattatat-----------atgtcggtgtcggacacgatacatgtctaacacggggacacgccttat 39138539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 7438726 - 7438836
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| || |||||||| | |||| |||||| ||||| ||||  |||||||||||||  |||||  |||||||||| || |||| |||| ||    
T  7438726 aaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaacacgacacatgtgcgacactaggacacgcctaattcaaggagtgtcc 7438825  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  7438826 gtgcttcatag 7438836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 25791616 - 25791721
Alignment:
Q  158 tatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgt 257  Q
    |||||||||| ||||||||||| |||||  ||||| |||||| ||||| | ||| ||||| ||||| ||| || |||| |||||||||| ||||||||||    
T  25791616 tatgaagcacggatacggacacagacactgacacgccgacaccgctaattatttgagaaattcacataat-caatgtagttatatgtgtcggtgtcgtgt 25791714  T
Q  258 cgatgtc 264  Q
     ||||||    
T  25791715 agatgtc 25791721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 25822689 - 25822786
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||| | |||| |||||||| ||| | ||||||||||||| |||||||||  |||||| |||| ||| ||| |||| ||||| ||||||||    
T  25822689 cagtgtaattacaagtgtcggtgtcgtatcggtatcggacacgacacgtgtctgacatcgggacatgcctaatctaaggagtgtccgtgtttcatagt 25822786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 5409835 - 5409771
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||| |||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  5409835 tgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 9778560 - 9778624
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||| |||| |||| ||||| ||||||||||| ||||||| |||| |||||||||||||    
T  9778560 tgtcggacacaacacgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 15902842 - 15902905
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatg 278  Q
    ||||||||| |||  ||||||||||||||||| ||||| |||||| | ||||||||||||||||    
T  15902842 aaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggacacgacacatg 15902905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 22602751 - 22602704
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcga 260  Q
    ||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcga 22602704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 26329423 - 26329356
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtc 280  Q
    |||||| |||| ||| |||||||||||||||||| || ||||||||| |||| |||||||||| ||||    
T  26329423 agaaaaacacacaattcagtgtaattatatgtgtcggcgtcgtgtcggtgtcagacacgacacgtgtc 26329356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 9933318 - 9933364
Alignment:
Q  240 tatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacac 286  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||    
T  9933318 tatgtgtcagtgtcgtgtcggtgtcggacacgacacatgtctgacac 9933364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 17307911 - 17307957
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  17307911 agaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcg 17307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 324
Target Start/End: Original strand, 20549839 - 20549909
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||| |||||||||| ||||||||| ||||  | ||||||||| |||| || |||||||||||||||||    
T  20549839 gtgtcggtgtcggacacaacacatgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 18215283 - 18215182
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| ||| | ||||||||||| |||||| |||| |||||||   ||| | ||||||||| ||| ||||||| ||| | |||| |||||||||    
T  18215283 ctatgaagcacggatgcagacacggacactaacacgccgacgcagctaataatttgaaaaaatcacataatgcagtgtagttacaagtgtcggtgtcgtg 18215184  T
Q  257 tc 258  Q
    ||    
T  18215183 tc 18215182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 8160374 - 8160492
Alignment:
Q  157 ctatgaagcacagatacggacacggacacc-aacacgtc---gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgt 252  Q
    |||||| |||| ||||| |||||||||||| |||||| |   ||||| |||||   ||| ||||||| ||| |||  ||||||||||||||||||||| |    
T  8160374 ctatgatgcacggatactgacacggacaccgaacacgacactgacaccgctaataatttaagaaaattacataatttagtgtaattatatgtgttggtat 8160473  T
Q  253 cgtgtcgatgtcggacacg 271  Q
    ||||||| ||||| |||||    
T  8160474 cgtgtcggtgtcgaacacg 8160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 35297713 - 35297661
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcg 265  Q
    ||||||||||| ||| || | |||||||||||||||||||||||| |||||||    
T  35297713 agaaaatcacataattcattataattatatgtgttggtgtcgtgttgatgtcg 35297661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 324
Target Start/End: Original strand, 4794923 - 4795018
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    ||||||||||||| |||| |||  ||| ||| ||||||||||||||| | ||||||||    ||||| || |||||||||||| | ||||||||||    
T  4794923 cagtgtaattataagtgtcggtaccgtatcggtgtcggacacgacacgtatctgacacctaaacacgtctaatccaagaagtgtctgtgcttcata 4795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 7058460 - 7058540
Alignment:
Q  229 cagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtg 311  Q
    ||||||||||| | ||||||||||||||||||  |||||||| ||||||||| ||||  |  |||||||| ||||||| ||||    
T  7058460 cagtgtaattacaagtgttggtgtcgtgtcga--tcggacacaacacatgtccgacattgacacacgcctaatccaaggagtg 7058540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 325
Target Start/End: Complemental strand, 43027548 - 43027404
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| |||| |||||||   ||| | ||||||||| ||| |||||||| || | |||| |||||||||||       |||||||||    
T  43027548 gacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtcgtgtca------gacacgaca 43027455  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| ||||| ||||||||||| |||| |  |||| |||||||||||||    
T  43027454 cgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 1656675 - 1656721
Alignment:
Q  194 cgacacagctaaattttttagaaaatcacaaaatacagtgtaattat 240  Q
    ||||||| |||||||||||| ||||||||| ||| ||||||||||||    
T  1656675 cgacacaactaaattttttaaaaaatcacataattcagtgtaattat 1656721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 29787465 - 29787351
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtg 256  Q
    ||||||||||| |||||  |||||||||  |||||| |||||| |||||   ||| ||||||||||| ||| |||||||||  |||||||||||||  ||    
T  29787465 ctatgaagcacggataca-acacggacattaacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaat--tatgtgttggtgtaatg 29787369  T
Q  257 tcgatgtcggacacgaca 274  Q
    ||| ||| ||||| ||||    
T  29787368 tcggtgttggacatgaca 29787351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 30730981 - 30731011
Alignment:
Q  157 ctatgaagcacagatacggacacggacacca 187  Q
    |||||||||||||||||||||||||||||||    
T  30730981 ctatgaagcacagatacggacacggacacca 30731011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 32094019 - 32093953
Alignment:
Q  261 tgtcggacacgacacatgtctgacac-ggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    ||||||||||||||| |||| ||||| |||||||||||| |||| || ||||  |||||||||||||    
T  32094019 tgtcggacacgacacgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatagt 32093953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 5233647 - 5233692
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||    
T  5233647 agaaaatcacataatctagtgtaattatatgtgttggtgttgtgtc 5233692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 9482952 - 9482993
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 9482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 254
Target Start/End: Original strand, 15680771 - 15680868
Alignment:
Q  157 ctatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcg 254  Q
    ||||||||||| |||||||||| ||||||  ||||| ||||| ||||||   ||  | ||||||||| |||  |||||||||||| |||| |||||||    
T  15680771 ctatgaagcacggatacggacatggacactgacacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcg 15680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 17851445 - 17851482
Alignment:
Q  209 ttttagaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  17851445 ttttagaaaatcacataattcagtgtaattatatgtgt 17851482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 7328758 - 7328686
Alignment:
Q  187 aacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    |||||||||| || |||||   ||| ||||||| ||| |||  ||||||||||||||||| ||||||||||||    
T  7328758 aacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 8234201 - 8234245
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaa 305  Q
    |||||||||||||||||||| ||||| | ||||||||| ||||||    
T  8234201 tgtcggacacgacacatgtccgacaccgagacacgcctaatccaa 8234245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 11831467 - 11831563
Alignment:
Q  230 agtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatagt 326  Q
    |||||||||| | || || ||||||| ||| ||||||||||||||  ||| |||||| ||  ||||||| ||||||||| ||  | |||||||||||    
T  11831467 agtgtaattacaagtattcgtgtcgtatcggtgtcggacacgacatgtgtttgacaccggagcacgcctaatccaagaactgttcatgcttcatagt 11831563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 18213113 - 18213041
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaatttttt-agaaaatcacaaaatacagtgtaattatatgtgt 246  Q
    |||||||||||  | ||| ||||||| |||| |||||| ||||||||||| |||  |||||||||||||||||    
T  18213113 gacacggacactgatacgccgacacaactaattttttttagaaaatcacataatttagtgtaattatatgtgt 18213041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 323
Target Start/End: Complemental strand, 26033500 - 26033392
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | |||| ||| |||||||| |||| |||| ||||| |||| || || | ||||| ||| |||| || |||| ||    
T  26033500 aaaatcacataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagacatgacacgtgtccgataccgcgacacacctaatccgaggagtgtcc 26033401  T
Q  315 gtgcttcat 323  Q
    ||| |||||    
T  26033400 gtgtttcat 26033392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 241574 - 241724
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||||| ||||||||||||   |||   ||||||||| |||  |||||||||||  |||| |||||||||| | ||||||||||||||    
T  241574 gacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacacgaca 241673  T
Q  275 catgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    | |||| ||||| ||||||||||| |||| ||||||| |||||||||||||    
T  241674 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 9878 - 9962
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    |||| ||||||| ||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||    
T  9878 gacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcggtgtcgcgtcg 9962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 53198 - 53303
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||| ||| ||||||||||||| |||| |||| ||||||| ||||||||| ||||| |||| ||||| ||||||||  | ||||||||||||     
T  53198 agaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgggacacgtttaatccaagaagtgt 53297  T
Q  313 ccgtgc 318  Q
    ||||||    
T  53298 ccgtgc 53303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 9788 - 9678
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgc 312  Q
    ||||||||||  ||| |||||||||||||||||| |||||||||| | |||| |||||||||| |||||||||  ||||||||  | |||| || ||||     
T  9788 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcgtgttggtgtcagacacgacacttgtctgacatcgggacacgtataatccgaggagtgt 9689  T
Q  313 ccgtgcttcat 323  Q
    |||||||||||    
T  9688 ccgtgcttcat 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 3888 - 3778
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||| | ||||  ||||||||| | |||||||||||||||||||| ||||  | ||||||||| |||| || |||| ||    
T  3888 aaaatcacataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacacgacacatgtccgacatcgagacacgcctaatccgaggagtgtcc 3789  T
Q  315 gtgcttcatag 325  Q
     ||||||||||    
T  3788 ttgcttcatag 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 293
Target Start/End: Complemental strand, 44584 - 44486
Alignment:
Q  195 gacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggaca 293  Q
    ||||| ||||||  ||| ||||||||||| ||| |||||||||||||||||| ||| |||||||| ||| |||||| |||| |||| ||||| ||||||    
T  44584 gacaccgctaaaaatttgagaaaatcacataattcagtgtaattatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtccgacactgggaca 44486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 137798 - 137880
Alignment:
Q  213 agaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacg 295  Q
    ||||||||||| ||| ||||||| | ||||||||||||||||||||  |||||||||||  ||||||| ||||| | ||||||    
T  137798 agaaaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtcagtgtcggacacggtacatgtccgacaccgagacacg 137880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 135391 - 135308
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtc 258  Q
    ||||| |||||||||||  |||||| |||||   ||| ||||||||||| ||| | |||||||||||||||| |||||||||||    
T  135391 gacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgtcggtgtcgtgtc 135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 71745 - 71855
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| |||||||||||   ||||  ||||||||||| |||||||||| |||| |||| ||||| |||||||| || |||| || |||| |     
T  71745 aaaatcacacaattcagtgtaattactagtgtcagtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgactaatccgaggagtgtcg 71844  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  71845 gtgcttcatag 71855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 264
Target Start/End: Original strand, 99907 - 99962
Alignment:
Q  209 ttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtc 264  Q
    ||||||||||| ||| ||| || ||||||||||||||||||||||||||| |||||    
T  99907 ttttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtcaatgtc 99962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 92877 - 92940
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||||||||||||||||| |||||  |||||||||| |||| || |||| ||||||||||||    
T  92877 tgtcggacacgacacatgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 4879 - 4821
Alignment:
Q  267 acacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||||| ||||| ||||||||||| |||| || |||| |||||||||||||    
T  4879 acacgacacatgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 23531 - 23641
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgccc 314  Q
    ||||||||| ||| ||||||||||||| ||||  ||||||| ||| |||||||||||| |  |||| || || ||||||||| | |||| |||||||       
T  23531 aaaatcacataattcagtgtaattataagtgtcagtgtcgtttcggtgtcggacacgatatgtgtccgagactgggacacgcataatcccagaagtgttt 23630  T
Q  315 gtgcttcatag 325  Q
    |||||||||||    
T  23631 gtgcttcatag 23641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 23440 - 23484
Alignment:
Q  215 aaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcg 259  Q
    ||||||||| ||| ||||||||||||| |||| ||||||||||||    
T  23440 aaaatcacataattcagtgtaattataagtgtcggtgtcgtgtcg 23484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 13454 - 13523
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||||||||  |||||||||  |||||| ||| ||||||| |||| |||||||||||    
T  13454 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 21873 - 21804
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcat 323  Q
    |||||| |||||||||||||||  |||||||||  |||||| ||| ||||||| |||| |||||||||||    
T  21873 gtgtcggtgtcggacacgacacgcgtctgacactaggacacacctaatccaaggagtgtccgtgcttcat 21804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 253
Target Start/End: Original strand, 17732 - 17828
Alignment:
Q  154 atactatgaagcacagatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtc 253  Q
    |||||||||||||||||||||||||| |||||  ||||  ||||||| |||  ||||| ||||||||||| ||  | |||||||| ||||||| ||||||    
T  17732 atactatgaagcacagatacggacac-gacacggacac--cgacacaactagttttttaagaaaatcacacaactcggtgtaattgtatgtgtcggtgtc 17828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 17903 - 17840
Alignment:
Q  231 gtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacac 294  Q
    |||||||||||||||  |||||||| ||| ||| ||||||||||| |||| ||||| |||||||    
T  17903 gtgtaattatatgtgacggtgtcgtatcggtgttggacacgacacgtgtccgacactgggacac 17840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 263451 - 263351
Alignment:
Q  175 gacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgaca 274  Q
    |||||||||||  ||| ||| |||| |||||   ||| |||||| |||| ||| ||||||||||||| ||||  ||||||||||| |||| |||||||||    
T  263451 gacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataagtgtcagtgtcgtgtcggtgtcagacacgaca 263352  T
Q  275 c 275  Q
    |    
T  263351 c 263351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 51785 - 51864
Alignment:
Q  169 gatacggacacggacaccaacacgtcgacacagctaaattttttagaaaatcacaaaatacagtgtaattatatgtgttg 248  Q
    |||||||||||||||||  ||||| ||||||||||||   ||| | ||||||||| ||| ||||||||||| | ||||||    
T  51785 gatacggacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttg 51864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 473 - 403
Alignment:
Q  254 gtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcata 324  Q
    |||||| ||||||||||||| | |||| ||||| ||||||| ||| |||| || |||| ||||||||||||    
T  473 gtgtcggtgtcggacacgacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 8662 - 8720
Alignment:
Q  267 acacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||| |||| ||||| |||| |||||| ||||||| |||| |||||||||||||    
T  8662 acacgacacgtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 8685 - 8795
Alignment:
Q  214 gaaaatcacaaaatacagtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcc 313  Q
    |||||||||| | | |||| |||||||| |||| ||||||||||| ||||| |||  || || |||| || ||   |||||||||||||| ||||||| |    
T  8685 gaaaatcacatagttcagtataattataagtgtcggtgtcgtgtctatgtcagacgtgatacgtgtccgatactaagacacgccttatccgagaagtgtc 8784  T
Q  314 cgtgcttcata 324  Q
    | |||||||||    
T  8785 catgcttcata 8795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 8641 - 8564
Alignment:
Q  248 ggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    |||||||||||| | |||||||||| || |||| ||||| || |||||||| || | || |||| |||||||||||||    
T  8641 ggtgtcgtgtcggtatcggacacgatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatag 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 14582 - 14646
Alignment:
Q  261 tgtcggacacgacacatgtctgacacggggacacgccttatccaagaagtgcccgtgcttcatag 325  Q
    ||||||||||||||| |||| ||||| | ||||||||| ||| ||| ||||  ||||||||||||    
T  14582 tgtcggacacgacacgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 14993 - 15021
Alignment:
Q  157 ctatgaagcacagatacggacacggacac 185  Q
    |||||||||||||||||||||||||||||    
T  14993 ctatgaagcacagatacggacacggacac 15021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 84996 - 84924
Alignment:
Q  231 gtgtaattatatgtgttggtgtcgtgtcgatgtcggacacgacacatgtctgacacggggacacgccttatcc 303  Q
    |||||||||||| ||| |||||| ||||||||||| |||| |||| |||| ||||   |||||||||| ||||    
T  84996 gtgtaattatatatgtcggtgtcatgtcgatgtcgaacacaacacgtgtccgacaacaggacacgcctaatcc 84924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University